PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG296600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 497aa MW: 56469.4 Da PI: 5.156

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG296600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	39.7	7.5e-13	219	301	15	100
GRAS 15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + l a++lL++++++as +gd+mqRla++f+++L+arl++++s+l ++l +++ s e l+a+kl+ + ++kf ++ N+ Pavir.8NG296600.1.p 219 RTLLSARELLKQIKKHASASGDAMQRLAQCFAKGLEARLLGTGSHLWHSLITERPS---LMEFLQAYKLYLAAESFIKFHAIMMNS 301 566789*****************************************9999888...9*****************9999885 PP
2	GRAS	93.5	3.4e-29	292	488	176	373
GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............desv..sleserdevLklvkslsPkvvvvveqeadhnse 251 ++f++ ++ + e++ +e+L+++ +E+l+Vn + ++ desv + +s+rd vL+ +++++P+v++ + + ++ ++ Pavir.8NG296600.1.p 292 IKFHA-IMMNSEKVCIEDLKTDDDEVLVVNDLFVGENNClvllqtlegtlmDESVffDYPSPRDIVLNNIRNMRPNVFIQSIVNYSC-GS 379 58999.578899999************988866665567889999999966652256679*************99999999.67 PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 sFl rf al+yy+alfd+l+a++pre++ r+ +E+ +lg ++ n++aceg + e++++W+ r ++aG++++pl+ +++++ k Pavir.8NG296600.1.p 380 SFLSRFHGALSYYTALFDMLDATIPRENQLRVLLEQGFLGHAALNAIACEGVDLMDCPEKYKQWQVRNQRAGLRQLPLKPQIVNELK--- 466 9*****************************************************************************9987654... PP GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e++ ++l++gW ++ L++ S W Pavir.8NG296600.1.p 467 ----------EKDGQWLLQGWAGHILFAHSTW 488 ..........4566777788888888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.416	292	482	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-26	292	488	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MATTPEEFFA KGLMDPSPPS PAVFLDFPLM PEGCQGPFSP DDTVLSYVSV MLMEEDTDDN 60 LLYQYSDHPA LFQVQQSFAQ ILCPPSSRVD HDNTNRGDMD GIKDLFQNNN GQDFLPNDNS 120 FRRDELVNCM SRQSSSHCGV KKRHNRDKHQ DEVSRASKAV KMMEEEEIGA YKMFEEMMFH 180 GYKICITSME NLRISMAMES EKNNRKSISI KTRDVVDLRT LLSARELLKQ IKKHASASGD 240 AMQRLAQCFA KGLEARLLGT GSHLWHSLIT ERPSLMEFLQ AYKLYLAAES FIKFHAIMMN 300 SEKVCIEDLK TDDDEVLVVN DLFVGENNCL VLLQTLEGTL MDESVFFDYP SPRDIVLNNI 360 RNMRPNVFIQ SIVNYSCGSS FLSRFHGALS YYTALFDMLD ATIPRENQLR VLLEQGFLGH 420 AALNAIACEG VDLMDCPEKY KQWQVRNQRA GLRQLPLKPQ IVNELKEKDG QWLLQGWAGH 480 ILFAHSTWVA EDVPSK*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MATTPEEFFA KGLMDPSPPS PAVFLDFPLM PEGCQGPFSP DDTVLSYVSV MLMEEDTDDN  60
LLYQYSDHPA LFQVQQSFAQ ILCPPSSRVD HDNTNRGDMD GIKDLFQNNN GQDFLPNDNS  120
FRRDELVNCM SRQSSSHCGV KKRHNRDKHQ DEVSRASKAV KMMEEEEIGA YKMFEEMMFH  180
GYKICITSME NLRISMAMES EKNNRKSISI KTRDVVDLRT LLSARELLKQ IKKHASASGD  240
AMQRLAQCFA KGLEARLLGT GSHLWHSLIT ERPSLMEFLQ AYKLYLAAES FIKFHAIMMN  300
SEKVCIEDLK TDDDEVLVVN DLFVGENNCL VLLQTLEGTL MDESVFFDYP SPRDIVLNNI  360
RNMRPNVFIQ SIVNYSCGSS FLSRFHGALS YYTALFDMLD ATIPRENQLR VLLEQGFLGH  420
AALNAIACEG VDLMDCPEKY KQWQVRNQRA GLRQLPLKPQ IVNELKEKDG QWLLQGWAGH  480
ILFAHSTWVA EDVPSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG296600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791277.1	0.0	scarecrow-like protein 34
TrEMBL	A0A2T8IAE5	1e-173	A0A2T8IAE5_9POAL; Uncharacterized protein
STRING	Pavir.Hb00039.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25434	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	5e-44	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Pavir.8NG296600.1.p