PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG296000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 666aa MW: 73259.8 Da PI: 5.1072

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG296000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	330.2	3.9e-101	285	656	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cA+av++++ + a++lL ++++++sp+gd++qRla +f+e+L+arla+s+s++yk+l +++ s ++e l+a++++ +s + Pavir.8NG296000.1.p 285 STLLIHCAQAVATDNRRSATELLRQIKQHSSPRGDATQRLANCFAEGLEARLAGSGSQVYKSLMAERIS---VVEYLKAYQVYLAASCFK 371 579**********************************************************999998...************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 +++ N +I + ++g ++vHi+D++i++G+QWp+Ll +a+ ++gpp++RiTg++ p++g + ++eetg rL++ A++lgvpf+f+ Pavir.8NG296000.1.p 372 MMAFKFSNMTIAKVIAGRKKVHIVDYGIQYGFQWPSLLGYMATLKGGPPQVRITGIDLPQPGfrPASRIEETGCRLSNCASQLGVPFKFH 461 **********************************************************99************************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ r+e++ +++L+++p+E+l+Vn++ + +l+de v+++s +rd vL +++++P+ +++ +a+++++ F++rf eal ++sa+ Pavir.8NG296000.1.p 462 S-ITARWETIGVDDLNIDPDEVLIVNSIRNFGNLMDEGVDIDSpsPRDVVLGNIRKMKPDAFILFVMNASYSAPFFVTRFREALFFHSAI 550 .699*******************************9999889**************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 fd+l+a++pr++++r vEr l+++ + nvvaceg +r+er et+++W+ r ++aG++++pl+ +++k ++ +r+ + + + ++ ++++ Pavir.8NG296000.1.p 551 FDMLDATAPRDNHQRFLVERGLFRKCALNVVACEGLDRVERPETYKQWQVRNHRAGLRQLPLDPDVVKAVRENVRNLYHKDFVIDVDHQW 640 **************************************************************************888***** PP GRAS 358 lvlgWkdrpLvsvSaW 373 l+ gWk+r L+++S W Pavir.8NG296000.1.p 641 LLEGWKGRILYAMSTW 656 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.006	258	637	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-98	285	656	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MEEDMDDNFL YQFPDHPALL QAQEPYARIL SDTNSTASGS AATLSPSSDY DPVQLLVSPL 60 SPDMGLHDTG DDAGTFFLPA QDGVSPGLEQ NPAKSGTAGD ADAFVAGRFG SGTGTGVQSS 120 AFLDIADEQS PAQLGTTTLP LPAGDGDHAV LASAFFSGQN GENMDMLSTA FLKGMEEANK 180 FLPTINNSLL IDQEEGRVNG RGRKNRLNSD DLEAETCRKS KLMVPEPEET GDKVDEMIVN 240 GREMCLKEME ALRITMGSDA KNNSRKGKGR SAKGRRSADE AVDLSTLLIH CAQAVATDNR 300 RSATELLRQI KQHSSPRGDA TQRLANCFAE GLEARLAGSG SQVYKSLMAE RISVVEYLKA 360 YQVYLAASCF KMMAFKFSNM TIAKVIAGRK KVHIVDYGIQ YGFQWPSLLG YMATLKGGPP 420 QVRITGIDLP QPGFRPASRI EETGCRLSNC ASQLGVPFKF HSITARWETI GVDDLNIDPD 480 EVLIVNSIRN FGNLMDEGVD IDSPSPRDVV LGNIRKMKPD AFILFVMNAS YSAPFFVTRF 540 REALFFHSAI FDMLDATAPR DNHQRFLVER GLFRKCALNV VACEGLDRVE RPETYKQWQV 600 RNHRAGLRQL PLDPDVVKAV RENVRNLYHK DFVIDVDHQW LLEGWKGRIL YAMSTWDADD 660 AVSEV*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MEEDMDDNFL YQFPDHPALL QAQEPYARIL SDTNSTASGS AATLSPSSDY DPVQLLVSPL  60
SPDMGLHDTG DDAGTFFLPA QDGVSPGLEQ NPAKSGTAGD ADAFVAGRFG SGTGTGVQSS  120
AFLDIADEQS PAQLGTTTLP LPAGDGDHAV LASAFFSGQN GENMDMLSTA FLKGMEEANK  180
FLPTINNSLL IDQEEGRVNG RGRKNRLNSD DLEAETCRKS KLMVPEPEET GDKVDEMIVN  240
GREMCLKEME ALRITMGSDA KNNSRKGKGR SAKGRRSADE AVDLSTLLIH CAQAVATDNR  300
RSATELLRQI KQHSSPRGDA TQRLANCFAE GLEARLAGSG SQVYKSLMAE RISVVEYLKA  360
YQVYLAASCF KMMAFKFSNM TIAKVIAGRK KVHIVDYGIQ YGFQWPSLLG YMATLKGGPP  420
QVRITGIDLP QPGFRPASRI EETGCRLSNC ASQLGVPFKF HSITARWETI GVDDLNIDPD  480
EVLIVNSIRN FGNLMDEGVD IDSPSPRDVV LGNIRKMKPD AFILFVMNAS YSAPFFVTRF  540
REALFFHSAI FDMLDATAPR DNHQRFLVER GLFRKCALNV VACEGLDRVE RPETYKQWQV  600
RNHRAGLRQL PLDPDVVKAV RENVRNLYHK DFVIDVDHQW LLEGWKGRIL YAMSTWDADD  660
AVSEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-39	267	656	1	377	Protein SCARECROW
5b3h_D	1e-39	267	656	1	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG296000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826966.1	0.0	scarecrow-like protein 30
TrEMBL	A0A3L6PL53	0.0	A0A3L6PL53_PANMI; Uncharacterized protein
STRING	Pavir.Ha00318.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-153	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG296000.1.p