PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG295900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 809aa    MW: 87921.7 Da    PI: 4.5822
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG295900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.32e-1054288001373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ L++cA+ v++gd + a +lL ++++++sp+gd++qR+a++f+e+L+arla+++s++y++l +++ts   ++e l+a+klf  +s +
  Pavir.8NG295900.1.p 428 LRTMLIHCAQSVATGDRRSAMELLRQIKQHSSPRGDATQRMAHCFAEGLEARLAGTGSQVYQSLMAKHTS---VVEFLKAYKLFTAASSL 514
                          5789***************************************************************999...***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+  + aNq+Il av+g +++Hi+ +++++GlQWp Ll+ L++R++gpp++R Tg++ p++g   + ++eetg+rL++ A e+gvpf+f
  Pavir.8NG295900.1.p 515 KKVHIIFANQTILSAVAGRSKLHIVVYGLQYGLQWPGLLHFLSCREGGPPEVRFTGIDLPQPGfrPAYQIEETGRRLSNCALEFGVPFKF 604
                          **************************************************************99999*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          ++ +a ++e++  e+L+++p+E+l+V +     +l+desv+++   +rd vL+ +++++P+v+++   +  ++++ Fl+rf eal +ysa
  Pavir.8NG295900.1.p 605 QA-IAAKWETVCAEDLNIDPDEVLVVYSECDFSKLMDESVDVDTpsPRDMVLNNIRKMRPNVFILFVMNGTYGAPFFLTRFREALFFYSA 693
                          **.799********************************998776669******************************************* PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                          lfd+l+a++pr+++er  +Er ++gr++ nv+acega+r er et+++W+ r ++aG+k++pl+ +++k a+  +++++ + + ++e++ 
  Pavir.8NG295900.1.p 694 LFDMLDATIPRDNDERLLIERDIFGRSALNVIACEGADRAERPETYKQWQVRNHRAGLKQLPLNPEVVKIARDKVKNYYHKDFLIDEDHR 783
                          *******************************************************************************889******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          +l++gWk+r L+++S W
  Pavir.8NG295900.1.p 784 WLLQGWKGRVLYAMSTW 800
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.719402781IPR005202Transcription factor GRAS
PfamPF035146.9E-103428800IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MSATPEESLG QGACLAAPEP FSPSVFLDLP PTPRPDGDAD DPASDDDLVL PFISRMLMEE  60
DIDDKFFYQF PDHPALLNAQ QPYAQILLSD DSATTSNSSS AGTAAANSTL SPSSSSDAPA  120
SAEPAWPYDP IELSQLLRSP PYPDTVLGLH DFTADDVDAL LLQGQGEATA GFPPFLDTAG  180
GGAGGGQRQG AASIATQIAA GAGSPSLAAQ NAGTQSSAAD EQDTKTATAS VIPNSVADEQ  240
DAKATNATTL PAADSDPAAL ASAFFSAQSG ESMDMLNMAF LKGMEEAKKF LPTNNSLLID  300
LEDAPGRSLP GDSKPATGFA AAQVKEEVVA DGMLLFGGST TGRGRKNRHT DEDLEAESGR  360
NSKLMMPEQE ETGAGELFDE LMSCNYDGFL KRMNDLRIAM DSESEKSARR VSGKGARGRQ  420
RADEVVGLRT MLIHCAQSVA TGDRRSAMEL LRQIKQHSSP RGDATQRMAH CFAEGLEARL  480
AGTGSQVYQS LMAKHTSVVE FLKAYKLFTA ASSLKKVHII FANQTILSAV AGRSKLHIVV  540
YGLQYGLQWP GLLHFLSCRE GGPPEVRFTG IDLPQPGFRP AYQIEETGRR LSNCALEFGV  600
PFKFQAIAAK WETVCAEDLN IDPDEVLVVY SECDFSKLMD ESVDVDTPSP RDMVLNNIRK  660
MRPNVFILFV MNGTYGAPFF LTRFREALFF YSALFDMLDA TIPRDNDERL LIERDIFGRS  720
ALNVIACEGA DRAERPETYK QWQVRNHRAG LKQLPLNPEV VKIARDKVKN YYHKDFLIDE  780
DHRWLLQGWK GRVLYAMSTW VAEDNNIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4543480025378Protein SCARECROW
5b3h_A7e-4543480024377Protein SCARECROW
5b3h_D7e-4543480024377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.106590.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG295900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9760950.0EU976095.1 Zea mays clone 622740 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826965.10.0scarecrow-like protein 34
TrEMBLA0A2T7CRC20.0A0A2T7CRC2_9POAL; Uncharacterized protein
STRINGPavir.Ha00317.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-151SCARECROW-like 14