PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG278100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 272aa    MW: 29791.3 Da    PI: 6.1785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG278100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000253766130
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPka 30
                         +++ + erE+  Rd++N+ f eL ++l  +
  Pavir.8NG278100.2.p 37 KKTHKAEREKLKRDQLNELFLELGSMLDLD 66
                         678899******************999764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-634105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1034100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.5633686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00694292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVADTESSDS LPGSSNAAVE MPIHGSLDQR SQEKTPKKTH KAEREKLKRD QLNELFLELG  60
SMLDLDRQNT GKATVVGDAA RVLRDLVTQV ESLRKEQSAL LLERQYVSLE KSELQEENAT  120
LKSQISELAN KLCTRMGNSS LGMLHRVANT RSPDLATHPL PHQMWSNIPN ISSVAMAHQM  180
NTASPLHSQH HSANNAEVYA LRPQELQLFP GASSSPEREC SHPRSAGATS SSLTDSLPSQ  240
LCLSLTQSSQ EERTSDVLVD TERTTKQLAD C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55640.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG278100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826529.11e-153transcription factor BHLH062-like isoform X1
TrEMBLA0A2S3IF231e-152A0A2S3IF23_9POAL; Uncharacterized protein
STRINGPavir.Ha00418.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-33bHLH family protein