PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG278100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 290aa MW: 31827.7 Da PI: 6.6779 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00028 | 55 | 84 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +++ + erE+ Rd++N+ f eL ++l + Pavir.8NG278100.1.p 55 KKTHKAEREKLKRDQLNELFLELGSMLDLD 84 678899******************999764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-6 | 52 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-10 | 52 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.563 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0069 | 60 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MVPLVRSREG SRRNINLGMV ADTESSDSLP GSSNAAVEMP IHGSLDQRSQ EKTPKKTHKA 60 EREKLKRDQL NELFLELGSM LDLDRQNTGK ATVVGDAARV LRDLVTQVES LRKEQSALLL 120 ERQYVSLEKS ELQEENATLK SQISELANKL CTRMGNSSLG MLHRVANTRS PDLATHPLPH 180 QMWSNIPNIS SVAMAHQMNT ASPLHSQHHS ANNAEVYALR PQELQLFPGA SSSPERECSH 240 PRSAGATSSS LTDSLPSQLC LSLTQSSQEE RTSDVLVDTE RTTKQLADC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5564 | 0.0 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG278100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826529.1 | 1e-152 | transcription factor BHLH062-like isoform X1 | ||||
TrEMBL | A0A3L6PFR7 | 1e-161 | A0A3L6PFR7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ha00418.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12959 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 5e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG278100.1.p |