PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.8NG253200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 262aa MW: 28498.7 Da PI: 7.7989 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.3 | 1.6e-41 | 17 | 93 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+ Pavir.8NG253200.2.p 17 CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 93 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-34 | 13 | 78 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.513 | 14 | 91 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-39 | 15 | 95 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-31 | 17 | 90 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MDWAAASGAP SWGTAACSVD GCRSDLSRCR EYHRRHRVCE AHSKTPVVVV GGQEQRFCQQ 60 CSRFHMLSEF DEGKRSCRKR LDGHNRRRRK PQHDLANLGG FFPYHQVNQF EMYPRTIPTA 120 CQDSDDMSLV DPQPPFSISF SRTPKQFPFP HDGGSLLSAS RHGHFLVQDG NHTGSSACSH 180 DLSGTLGPEC ALSLLSSSLH HPSPAGHAQV ASALSRIAST SQQVAATPVT TAFASGGSHH 240 VFVPDAALED PSQALPFPWQ Q* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 11 | 90 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 90 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.8NG253200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826748.1 | 1e-147 | putative squamosa promoter-binding-like protein 19 | ||||
Swissprot | Q2R3Y1 | 2e-90 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A3L6PNI8 | 1e-156 | A0A3L6PNI8_PANMI; Putative squamosa promoter-binding-like protein 19 | ||||
STRING | Pavir.Hb01173.1.p | 1e-155 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-41 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.8NG253200.2.p |