PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG247900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 29552 Da PI: 10.4858 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W++Ia+++ gR++k+c++rw++ Pavir.8NG247900.1.p 20 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 61.1 | 2.3e-19 | 73 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l++a++ +G++ W++Iar ++ gRt++ +k++w+ + Pavir.8NG247900.1.p 73 RPFTEEEEERLLNAHRTHGNK-WALIARLFP-GRTDNAVKNHWHVV 116 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.116 | 15 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-30 | 18 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-17 | 20 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-27 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.68E-14 | 23 | 64 | No hit | No description |
PROSITE profile | PS51294 | 27.485 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 72 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 74 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.27E-14 | 74 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MASSSTTNTS DGTKSSSCPR GHWRPGEDEK LRQLVEKYGP QNWNSIAEKL EGRSGKSCRL 60 RWFNQLDPRI NKRPFTEEEE ERLLNAHRTH GNKWALIARL FPGRTDNAVK NHWHVVMARR 120 SRERSRLLAR AASSSHSSSP SSAYPFGSGL PATSSLCFGF SKLGGGGGLF SSPAAAPPMS 180 LFKRFGTATG SKGLLGPSYE AARYSYSGKQ PAPPVSITFS SPREALAMDI GHHHGRHEHG 240 QKDYHASNGE ESLTRKDVPF IDFLGVGVSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-32 | 20 | 120 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-32 | 20 | 120 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-32 | 20 | 120 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG247900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065675 | 1e-143 | BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds. | |||
GenBank | HQ858682 | 1e-143 | HQ858682.1 Zea mays clone UT1138 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827950.1 | 1e-158 | myb-related protein A-like | ||||
TrEMBL | A0A2T7CMD6 | 1e-160 | A0A2T7CMD6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04678.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-61 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG247900.1.p |