PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG247700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 42440.8 Da PI: 4.2909 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.9 | 5.7e-21 | 4 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkya....tgkrknratksgy 82 lppG++F+P d+elv +yL ++++g++ +++ v +++ ++ Pw+L ++ ++ ++e yf ++++ +g r++r g+ Pavir.8NG247700.1.p 4 LPPGVHFRPDDDELVEFYLLPHARGEPasFPAGVVvVDDNAAGSTLPWELLdRHGRGADDEAYFLVRSSGDGDgqekRGARQERGCGGGT 93 79*************************553332332666678899*****7455556777999999886543322227889999999*** PP NAM 83 Wkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk++ + + s+ ++++ + ++ L ++ gr ++g + Wvmhey+l Pavir.8NG247700.1.p 94 WKSQKRLAHGGSRvddaGEKVHWSRHNLNLHMGRGESGGSVGWVMHEYAL 143 **99885443333344488899**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-27 | 2 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.735 | 4 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-14 | 5 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MLGLPPGVHF RPDDDELVEF YLLPHARGEP ASFPAGVVVV DDNAAGSTLP WELLDRHGRG 60 ADDEAYFLVR SSGDGDGQEK RGARQERGCG GGTWKSQKRL AHGGSRVDDA GEKVHWSRHN 120 LNLHMGRGES GGSVGWVMHE YALTDPSCPS LKICHVAFTG HGKNRKRLPG GGDVVDDQTE 180 EPASKRARVA TPGTGGSASL GSGSTTTTVD QDYSGVGRSS EEHQESNQIS LEWISRELFN 240 DDLQQNSFPS SVDVNYFSEE FAQAAAPTSE QQAVPEHIMA TPLPMVQETA GMEELREFMA 300 SMDRQEFIAP LPMVQETNGM AEPQESMAPM DQQETAGMAE LENPYQPMMA EFFPPMGVTL 360 DESCGLSHIS DMELGAQQDF VEWDGFLFY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG247700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954806.1 | 6e-94 | NAC domain-containing protein 48 | ||||
TrEMBL | A0A2T8KV81 | 1e-119 | A0A2T8KV81_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J28923.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8717 | 9 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44290.1 | 6e-14 | NAC domain containing protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG247700.1.p |