PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG217600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 441aa    MW: 45561 Da    PI: 7.6471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG217600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09269316455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.8NG217600.1.p 269 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 316
                          8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.80E-11263320No hitNo description
SuperFamilySSF474598.24E-17263332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-17265333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.809265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6269316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAHDGFLGGS HDLPWPLSHH AAVTGAAAGG PFSVLQAHVQ HALMGAGAGA GWEHDSAMSS  60
MVPSQSPSPS SLAVAAGGGA TFEAALMEQL ASRLGVSVPS PLSSRYPSCY SRTVGSPSKP  120
AAAPFGAPLL VADSERAARL SCLAASGGKL SRAASSQSLL GEPATATAPA PAQLHASDGS  180
SSDDPSRKRK APGGKSKAKD AVTTATPKSR EPEMRAKKCK LSTNAADDEE RKPAAGDAGR  240
SNGKGKEVAA EPPTDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCSKVTG  300
KAVMLDEIIN YVQSLQRQVE FLSMKLSTVN PRLELDVDSS IPKDANQPCT PAASSLAPPP  360
PVYSLEGGSS AALCYASSQG ATEASVVTSA KSFVTSSTFV NHHTPDHSIE GFQNANSQMG  420
SLWEEDDLQS LVLMGFRGST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG217600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370223e-87BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636603e-87BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268663e-87KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.10.0transcription factor BHLH089-like
TrEMBLA0A3L6Q2U40.0A0A3L6Q2U4_PANMI; Transcription factor bHLH62-like
STRINGPavir.Ha00788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-56bHLH family protein