PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG191600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 316aa    MW: 34171.3 Da    PI: 5.8672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG191600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12146191555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ + f  L +++P +     +K +K++iL  +++Y+k+L+
  Pavir.8NG191600.2.p 146 HVAAERKRREKMQQQFVALATMVPDL-----TKTDKISILGSTIQYVKQLE 191
                          899**********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15145203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16145203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-11146195No hitNo description
PfamPF000104.1E-10146191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-13147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKEGNPRKNQ KVMDEPNQWN SSESLHPEPD DHQDELAYMY QQDEHAGMQQ VFQDPDALRH  60
TLAMPGFQRF GSASALPNLS FGGAAAAVKN EQGQPSLSRS SILSFGARPA AATTLSFSGG  120
EDWPDVPVEG VPPERRSRSH LSTLEHVAAE RKRREKMQQQ FVALATMVPD LTKTDKISIL  180
GSTIQYVKQL EKMVKTLENQ SARITASDST GGSTDSQQAP GPSGSTHGVG SSIPTVEASI  240
HDDTVLLKIC CERRSGVLVM IISELESLGL SIMNTSVFPF SNSYFSITIT AKIGEGFSTT  300
VELVKNLTTA LRGFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154ERKRRE
2150155RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG191600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828601.10.0transcription factor bHLH18-like
TrEMBLA0A2S3ID800.0A0A2S3ID80_9POAL; Uncharacterized protein
TrEMBLA0A2T7CLF20.0A0A2T7CLF2_9POAL; Uncharacterized protein
STRINGPavir.Ha01098.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-30bHLH family protein