PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG191600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 338aa    MW: 37029 Da    PI: 5.9499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG191600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12168213555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ + f  L +++P +     +K +K++iL  +++Y+k+L+
  Pavir.8NG191600.1.p 168 HVAAERKRREKMQQQFVALATMVPDL-----TKTDKISILGSTIQYVKQLE 213
                          899**********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-16167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-15167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-10168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-11168217No hitNo description
SMARTSM003535.1E-13169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MHLLWFHFVR RFVVILFLLH ICSLPFFFSF MIEVMDEPNQ WNSSESLHPE PDDHQDELAY  60
MYQQDEHAGM QQVFQDPDAL RHTLAMPGFQ RFGSASALPN LSFGGAAAAV KNEQGQPSLS  120
RSSILSFGAR PAAATTLSFS GGEDWPDVPV EGVPPERRSR SHLSTLEHVA AERKRREKMQ  180
QQFVALATMV PDLTKTDKIS ILGSTIQYVK QLEKMVKTLE NQSARITASD STGGSTDSQQ  240
APGPSGSTHG VGSSIPTVEA SIHDDTVLLK ICCERRSGVL VMIISELESL GLSIMNTSVF  300
PFSNSYFSIT ITAKIGEGFS TTVELVKNLT TALRGFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERKRRE
2172177RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG191600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828601.11e-176transcription factor bHLH18-like
TrEMBLA0A2S3ID801e-175A0A2S3ID80_9POAL; Uncharacterized protein
TrEMBLA0A2T7CLF21e-175A0A2T7CLF2_9POAL; Uncharacterized protein
STRINGPavir.Ha01098.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-30bHLH family protein