PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG184500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 166aa MW: 18268.3 Da PI: 6.5397 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.6 | 9.9e-12 | 62 | 117 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 k+ rr+ NRe+ArrsR+R++ + Le v L++eN +L k++ ++++++ + Pavir.8NG184500.1.p 62 KKMRRMLLNRESARRSRRRRESHLCDLESQVSRLTSENASLLKRMADMTQKYQDAT 117 899***************************************99999999888655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.8E-11 | 58 | 122 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-10 | 59 | 114 | No hit | No description |
PROSITE profile | PS50217 | 10.932 | 60 | 114 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.46E-10 | 62 | 113 | No hit | No description |
Pfam | PF00170 | 7.2E-10 | 62 | 114 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 7.1E-7 | 129 | 160 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
EDSQVARIEH TGDGGGASLV TNNSNVLGRD DYQGDPINSG TSKEQSDACV NLEEKGDPAN 60 EKKMRRMLLN RESARRSRRR RESHLCDLES QVSRLTSENA SLLKRMADMT QKYQDATLDN 120 RNLIIAVETM RTKVNIAEEA VRRLSGTTLL LSSTSELPPS MSSVS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 81 | RRSRRRRE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG184500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142918.1 | 6e-66 | Basic leucine zipper 25 | ||||
Swissprot | Q6ETX0 | 1e-23 | RSBZ3_ORYSJ; bZIP transcription factor RISBZ3 | ||||
TrEMBL | A0A1D6KFI3 | 4e-67 | A0A1D6KFI3_MAIZE; Basic leucine zipper 25 | ||||
STRING | Pavir.J08279.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7595 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 8e-18 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG184500.1.p |
Publications ? help Back to Top | |||
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