PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG175600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 133aa MW: 14391.9 Da PI: 4.334 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 31.2 | 4.6e-10 | 2 | 58 | 40 | 96 |
NF-YC 40 saeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 s+e+P +++k e+fi elt+r+ + a++ r+++ sdi +a+++ + + l ++ Pavir.8NG175600.1.p 2 SSETPPVVTKVLEIFIQELTVRALMCAKSHGRSSILESDIYEAINSGESYVCLNNVL 58 89*********************************************9999887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-9 | 1 | 45 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.38E-9 | 1 | 59 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MSSETPPVVT KVLEIFIQEL TVRALMCAKS HGRSSILESD IYEAINSGES YVCLNNVLRR 60 AVTNHDQASM SSNAPQLQQE PHFVAATSRL IENGATDHPY KSGEEATQIS IEEPDEDLNL 120 PTTSSGGTEE TK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG175600.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450581.1 | 3e-29 | uncharacterized protein LOC8071541 | ||||
TrEMBL | A0A2S3IDE3 | 2e-71 | A0A2S3IDE3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha01152.1.p | 1e-90 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17894 | 5 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG175600.1.p |