PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG166300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 323aa    MW: 34404 Da    PI: 4.8936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG166300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16161210355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + GVr ++ +g+++AeIrd + +g  +r+++g+f+t+e Aa a+++a+ + +g
  Pavir.8NG166300.1.p 161 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWIGTFDTPEAAALAYDQAAFSARG 210
                          68******.**********43343..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-28160224IPR001471AP2/ERF domain
PROSITE profilePS5103221.272160218IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-20160220IPR016177DNA-binding domain
PRINTSPR003675.7E-8161172IPR001471AP2/ERF domain
CDDcd000187.47E-14161219No hitNo description
Gene3DG3DSA:3.30.730.109.4E-27161219IPR001471AP2/ERF domain
PfamPF008471.4E-12161210IPR001471AP2/ERF domain
PRINTSPR003675.7E-8184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEHELYTSYR YPPNQRRRPG FDFGVTDGDK LLQLEAFLLD GIDDAEPAEV CSDWSPPSSS  60
SSASNSPEVG AATGSATVGD PQHWAAGTDG THTSDMLLQL DAFLRGTDAD ADADEEECSI  120
WLSSSSPSST EASTVSPSRK SQHQLPEADA DASPGKKRPA FIGVRKRPWG KFAAEIRDST  180
RRGARVWIGT FDTPEAAALA YDQAAFSARG AGAVLNFPVE RVRESLAALA LAGGGGSPVL  240
ALKRRHSKRT RRQKASPATD SSRNPKPQQP PLAAAVPLRQ ATTAPMTSAS QCRCGIVELD  300
DLGDDYLEEL LRVVSSSELG EY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-23155220974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.252291e-61root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG166300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276832e-90KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828657.11e-122ethylene-responsive transcription factor 15-like
TrEMBLA0A3L6Q3131e-130A0A3L6Q313_PANMI; Uncharacterized protein
STRINGPavir.Ha01264.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-30ethylene response factor 1