PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG153900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 203aa MW: 22002.5 Da PI: 4.4722 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 57.1 | 4.1e-18 | 31 | 128 | 2 | 96 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l fw k ie++ +++nh++P++ + i++ + m+s+eaP +++k e+fi elt+r+ + a++ r+++ sdi +a+++ + Pavir.8NG153900.2.p 31 LDEFWRKIiveIENMVNLNNHTIPMSSVVEIIREHQGGLMMSSEAPPVVTKVLEIFIQELTVRASMCAKSHGRSSILESDIYEAINSGES 120 678999865569****************************************************************************99 PP NF-YC 89 fdflvdiv 96 + l ++ Pavir.8NG153900.2.p 121 YVCLNNVL 128 99887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.49E-14 | 37 | 117 | IPR009072 | Histone-fold |
Pfam | PF00125 | 1.0E-7 | 40 | 115 | IPR007125 | Histone H2A/H2B/H3 |
Gene3D | G3DSA:1.10.20.10 | 1.7E-13 | 49 | 115 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSSGSKGGAG RPQELHGSAP TPLPSLQPQE LDEFWRKIIV EIENMVNLNN HTIPMSSVVE 60 IIREHQGGLM MSSEAPPVVT KVLEIFIQEL TVRASMCAKS HGRSSILESD IYEAINSGES 120 YVCLNNVLRR AVTNHDQASM SSNAPQLQQE PHLVAATSRL IDNGPTDHPY KSGEEATQIS 180 AEEPDEDLNL PTTSSGDTEE TK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG153900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450581.1 | 1e-55 | uncharacterized protein LOC8071541 | ||||
TrEMBL | A0A2S3IDE3 | 1e-117 | A0A2S3IDE3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J25453.1.p | 1e-143 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-15 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG153900.2.p |