PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG142000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 318aa    MW: 34597.9 Da    PI: 5.8435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG142000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07135179554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h +rEr+RR+++ ++++ L  ++  +      K +K +i++ A  YI++L
  Pavir.8NG142000.1.p 135 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 179
                          889**********************7.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-12130200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.395130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-8134184No hitNo description
Gene3DG3DSA:4.10.280.101.1E-9135197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-5136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQMDSYFYAG FFHDEAPLYP HGAVPPSPEL PFGLIASPGE PEPPFPAPPA PRPAAFQDYS  60
VAGPELLPPA VGAGEPHYWS AGASVHMRVV DALGGMGGDP VHDQTMGEEW KEEPRRQRQQ  120
QPAGAAVESS RGFRHMMRER QRREKLSQSY ADLYAMVAAR SKGDKNSIVQ SAAIYIHELK  180
GAREQLLQRN EELKAQILGH DARQQCVKVQ FEVDEPASSI DSMIGALQRL KGMDVRARGI  240
RSTMSGRRLW TEMNVETTIA AVDVEKAVEE ALMQEVERNQ PQPQPVEAGS GGPGLPGTSA  300
GARGWGPQAS SHVQNVF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.130370.0stem
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG142000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556231e-164EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794972.10.0transcription factor BHLH148-like
SwissprotQ75KV91e-108BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A2S3II720.0A0A2S3II72_9POAL; Uncharacterized protein
STRINGPavir.J38335.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-19bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]