PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG130900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 562aa MW: 67330.3 Da PI: 9.684

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG130900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.2	2.2e-07	82	127	2	44
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreee 44 f+++Y+ +GF+v++++ +++ krn+ei+k++++C ++gk+ ++ Pavir.8NG130900.1.p 82 FFSFYGFLAGFEVVIAHVTRTttkKRNNEIYKQEMKCHRYGKEGTK 127 9*************9988888899*************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-5	82	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-28	266	346	IPR018289	MULE transposase domain
SMART	SM00575	0.0028	487	514	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MEKESREGRS HSTSRSNKRE DDHQLKRYQE INGSQVLTEE QLDEFIRSEK LAASEGNNAA 60 IESKYTPQIG MEFKDRDDAH HFFSFYGFLA GFEVVIAHVT RTTTKKRNNE IYKQEMKCHR 120 YGKEGTKKWI WKVVRLDLEH NHELSPKDRN QLFSGKKYMT DMEKGIIRTL NDNNIPTRKM 180 IAILSYLRGG LTALPYKTKD MQNLKTKINR EVTRSDMTKT FEYFRKIKTK DPTFYYRFQV 240 DENLKVKNIF WREGISLNWY SEFGDCVSFD TTYMTNKYNL PFAPFVGITG HGYTCLFGCA 300 FLSDETTETF KWVFETFLDS MGGKHPRSII TDQDKAMKAA IEKCYNKNLK CFVVNKGLPE 360 MFEDIVNYSV TEEEFETLWQ KMIYDFKLEN NKYFTKMWNM RKRFIPIYFK NEFFPFIQST 420 GRTMELYNRN IFLKFMNQLK LAEKYKYKEI EEGKYFEVWY KSNQIQKRER IRRYIVLTYL 480 TQRKEEFSCI YGKFNKDGIL CVHILKVIVE EEISEIPGKY FIDRWRKKEK KMHNPIRSET 540 SDTHELLRFN MLARKAAILT NK

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MEKESREGRS HSTSRSNKRE DDHQLKRYQE INGSQVLTEE QLDEFIRSEK LAASEGNNAA  60
IESKYTPQIG MEFKDRDDAH HFFSFYGFLA GFEVVIAHVT RTTTKKRNNE IYKQEMKCHR  120
YGKEGTKKWI WKVVRLDLEH NHELSPKDRN QLFSGKKYMT DMEKGIIRTL NDNNIPTRKM  180
IAILSYLRGG LTALPYKTKD MQNLKTKINR EVTRSDMTKT FEYFRKIKTK DPTFYYRFQV  240
DENLKVKNIF WREGISLNWY SEFGDCVSFD TTYMTNKYNL PFAPFVGITG HGYTCLFGCA  300
FLSDETTETF KWVFETFLDS MGGKHPRSII TDQDKAMKAA IEKCYNKNLK CFVVNKGLPE  360
MFEDIVNYSV TEEEFETLWQ KMIYDFKLEN NKYFTKMWNM RKRFIPIYFK NEFFPFIQST  420
GRTMELYNRN IFLKFMNQLK LAEKYKYKEI EEGKYFEVWY KSNQIQKRER IRRYIVLTYL  480
TQRKEEFSCI YGKFNKDGIL CVHILKVIVE EEISEIPGKY FIDRWRKKEK KMHNPIRSET  540
SDTHELLRFN MLARKAAILT NK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG130900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311831.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5S6T5	0.0	A0A1Z5S6T5_SORBI; Uncharacterized protein
STRING	Pavir.J07181.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-52	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8NG130900.1.p