PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG113600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 599aa    MW: 67212.6 Da    PI: 7.8898
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG113600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.42.6e-274175341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lpp frFhPtdeel+ +yL++++         +i+evdiy+++PwdLp+++k ++ ewy  +  +k+ +   +++  ++sgyW atgk +
  Pavir.8NG113600.2.p 417 LPPAFRFHPTDEELILHYLCNRA---------TIPEVDIYNMQPWDLPARAKFGDCEWYLSCFPKKEWHIFCHRKYPISSGYWMATGKAR 497
                          79*****************9864.........4899************99999999***999988887765555556899********** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +   g+  g k+ Lvf+    p+g+ t Wvmhey+l
  Pavir.8NG113600.2.p 498 RLTLSgaAGKMLGSKRRLVFH---LPSGKMTGWVMHEYHL 534
                          **998778889*********9...89************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.6E-37267414IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019415.23E-39414568IPR003441NAC domain
PROSITE profilePS5100530.831417568IPR003441NAC domain
PfamPF023655.9E-19418534IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MEDEHHPVES TVSNCVFKLD GGVKGHSDAT ILYNSSNKKV RLGVMVLSPT DERVLEGLSN  60
LFFVRGHDRP ARQCNPHNSG LKRLRCNPAA GTPLFPGNTF TEASASIPQH QFSHLGTTNI  120
GIASATYNLP AGNEQLLLSG GNFAHPDLVS HDYSTGSENF PNATKGTHFN MDQIALPVQL  180
LWDVPNVEST KRWSLLDQLM PLYSCAQKYT NYDSPTMGIM PKLYVSLAII PKQVTQSRRK  240
RGVLIELLEL EDSDEKRPRK RKSHTKYRLR FVNKVNEAYY TMNPIKADDG SHLKVALFDE  300
NDMKITFGPL SSASVEVVAL HGDFNVNGQD YWTSEEFSHC VVCPWHRKEA SVLGGDRILV  360
LAEGEACLGN AFFQVTSFLA RTGKFKMGVM LASVQEERIQ EGISEPLLVK DRQLEGLPPA  420
FRFHPTDEEL ILHYLCNRAT IPEVDIYNMQ PWDLPARAKF GDCEWYLSCF PKKEWHIFCH  480
RKYPISSGYW MATGKARRLT LSGAAGKMLG SKRRLVFHLP SGKMTGWVMH EYHLPDNTTL  540
RSIISSTTAS SSTSSTRDEW VLCRIFKKTD LLQPSPFLDD DAPVSPLRDC RLQAFLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-2941757015170Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255261KRPRKRK
2259263KRKSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG113600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-175PREDICTED: uncharacterized protein LOC107304550
TrEMBLA0A368SCE21e-111A0A368SCE2_SETIT; Uncharacterized protein
STRINGPavir.Ha00781.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-32NAC domain containing protein 47