PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG104600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 295aa    MW: 33263.2 Da    PI: 8.5723
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG104600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.4e-2479172187
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+ltpsdv+k++rl +p++fae++       +++ ++  lt+ed ++   W ++++ +++s +yvltkGW  Fvk+++L+ gD+v F+
  Pavir.8NG104600.1.p  79 FSKILTPSDVGKLNRLLIPRQFAEKYfpkmpkTKSEGNDPILTFEDcSTRFIWHFRFSLWRSSTTYVLTKGWPAFVKEKNLNNGDMVSFY 168
                          88**************************9888333445557*****777789************************************** PP

                          E-SS CS
                   B3  84 ldgr 87 
                          ++ +
  Pavir.8NG104600.1.p 169 HSVN 172
                          8755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-3168174IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-2277184No hitNo description
SuperFamilySSF1019362.22E-2478184IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1879186IPR003340B3 DNA binding domain
PfamPF023621.3E-2079174IPR003340B3 DNA binding domain
PROSITE profilePS5086312.70379188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAFLATRLSR EMEQQMEKVP LCENPFHMVN PFSSCLYVSP WASMHAPVFP LGLSNSYGGL  60
GVCGTSKRGR EVIEMEFLFS KILTPSDVGK LNRLLIPRQF AEKYFPKMPK TKSEGNDPIL  120
TFEDCSTRFI WHFRFSLWRS STTYVLTKGW PAFVKEKNLN NGDMVSFYHS VNKSIGSHYF  180
YIHIKPQGGI PSVPHRNTVP MFTPSSLLND EWVREGLGFG SDYRFEPTWK PLSFGSRGLE  240
PPMTLMPQPN ISPMSFGNCM GKAGKRLRLF GVDIDVSPCA NGDDFGNEWS NDVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-287618911119DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG104600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QL961e-180A0A3L6QL96_PANMI; Uncharacterized protein
STRINGPavir.Ha01451.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-37B3 family protein