PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG100500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 381aa MW: 40596.6 Da PI: 8.5776 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 309 | 354 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+YIk+Lq Pavir.8NG100500.2.p 309 SIAERVRRTKISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 354 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 303 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-16 | 306 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-13 | 307 | 358 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.4E-16 | 308 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-13 | 309 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-10 | 309 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEVCED FLQPGPRAGS PDPCADNVFS 60 RFLADHQIRD KPPAPAPHAP AAAHFPDTAA MASQQQQQMM FHSQQQQQQQ QQMAAVESGL 120 YRTVSSGMEA PTAAASSLIR QSSSPAGFLN HLNMDNAYGG MLRAGMGVGG FRNGASAAAA 180 ADSPSGGGRL KGQLSFSSRQ GSLMSQISEM GSEELGGSSP EGAGGGRGYI PGYAMSSGWE 240 DSSSLMSENL SGMKRPRDSS EPGQSGLTQQ FSLPKTSSEM AAIEKFLQFQ DAVPCKIRAK 300 RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTA DMLDLAVDYI KDLQKQVKVL 360 NESRASCPCS ASKQQQQFSG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG100500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821227.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A3L6QE40 | 0.0 | A0A3L6QE40_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J14004.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG100500.2.p |