PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG100500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 381aa    MW: 40596.6 Da    PI: 8.5776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG100500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13309354655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Pavir.8NG100500.1.p 309 SIAERVRRTKISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 354
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16306366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-13307358No hitNo description
Gene3DG3DSA:4.10.280.106.4E-16308366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEVCED FLQPGPRAGS PDPCADNVFS  60
RFLADHQIRD KPPAPAPHAP AAAHFPDTAA MASQQQQQMM FHSQQQQQQQ QQMAAVESGL  120
YRTVSSGMEA PTAAASSLIR QSSSPAGFLN HLNMDNAYGG MLRAGMGVGG FRNGASAAAA  180
ADSPSGGGRL KGQLSFSSRQ GSLMSQISEM GSEELGGSSP EGAGGGRGYI PGYAMSSGWE  240
DSSSLMSENL SGMKRPRDSS EPGQSGLTQQ FSLPKTSSEM AAIEKFLQFQ DAVPCKIRAK  300
RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTA DMLDLAVDYI KDLQKQVKVL  360
NESRASCPCS ASKQQQQFSG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG100500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821227.10.0transcription factor bHLH130-like
TrEMBLA0A3L6QE400.0A0A3L6QE40_PANMI; Uncharacterized protein
STRINGPavir.J14004.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-57bHLH family protein