PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG067700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 335aa    MW: 35880.2 Da    PI: 5.162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG067700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.62.1e-18101501128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk......sgyW 83 
                          lpp  +F+Ptd ++v +yL ++v g +++  ++i ++d +++ Pw++ +++ + ++ + +fF + + +   +kr +ra++       g+W
  Pavir.8NG067700.1.p  10 LPPANKFDPTDADIVAHYLLPRVVGFPNPHGHAIIDADPCSCPPWEFMRRHGHADSdHAFFFGRPRPAD-PKKRVERAVDpgedgvGGTW 98 
                          68999**********************999889**************8655555552566666666655.5789999855555556899* PP

                  NAM  84 katgk..dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            + +  ++ vls+      + e+   ++ L +y+g ++  + + Wvm +y++
  Pavir.8NG067700.1.p  99 DGQKSeaTRLVLSRagggaaRLEVRYKRHNLSYYHGPQK-IKTSGWVMYDYQI 150
                          955552266677768766554455888999****76554.47899******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-236163IPR003441NAC domain
PROSITE profilePS5100521.45110167IPR003441NAC domain
PfamPF023651.1E-1111150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEAYRFGFDL PPANKFDPTD ADIVAHYLLP RVVGFPNPHG HAIIDADPCS CPPWEFMRRH  60
GHADSDHAFF FGRPRPADPK KRVERAVDPG EDGVGGTWDG QKSEATRLVL SRAGGGAARL  120
EVRYKRHNLS YYHGPQKIKT SGWVMYDYQI VDPPHLSGII LHRVKITDRR KKEQGKQQQQ  180
QQAGAGAGAG HQVVPPGPDQ PGPSNYCEVQ EYGGVTEDTG GCYAAAAGHQ VVPPGPDQPG  240
PSNYCEVQEY GGAVGDTGGC YAAPAGGNNN YLHDGGVIGE TGGYYYVDDD GSQYLNQDLS  300
CYMYHGDGSG GDGDCFFNVG DDNSFQCPDG GNAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG067700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827521.11e-149NAC domain-containing protein 67-like
TrEMBLA0A2T7CKQ61e-160A0A2T7CKQ6_9POAL; Uncharacterized protein
STRINGPavir.J02970.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.13e-10NAC domain containing protein 58