PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG062000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 530aa MW: 61922.6 Da PI: 8.6943

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG062000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	7.1e-20	28	152	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................tekerr 53 kfYn+YA ++GFs+r+s+s+ s ++e k fvC+keg+ ++ k+ k+r+ Pavir.8NG062000.1.p 28 KFYNSYAGRIGFSIRTSTSRLSGLTREQHKVIFVCNKEGHGRKAKEGdpadesddsndekrgfkpensnkghgdedaekrkklvGGKKRK 117 6*******************99999*********99999889***************************99999888888 PP FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++ ++t+Cka++++k+ ++w+v+ + +HnHel Pavir.8NG062000.1.p 118 RERMHHTDCKARMVIKLI-ADRWHVIFFAPNHNHEL 152 99999*********.9*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-17	28	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-17	254	316	IPR018289	MULE transposase domain
Pfam	PF04434	3.6E-5	488	522	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.507	488	524	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0035	499	526	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
VADVEKVWST PPIPYTGQIF SSKLEARKFY NSYAGRIGFS IRTSTSRLSG LTREQHKVIF 60 VCNKEGHGRK AKEGDPADES DDSNDEKRGF KPENSNKGHG DEDAEKRKKL VGGKKRKRER 120 MHHTDCKARM VIKLIADRWH VIFFAPNHNH ELIVKPSLKN FMSTGRIMQL MNEFYGSAQL 180 VPYEGKDVGN FRSTIRRTEK YKDMQETLDY FKELENEDPE FFYKIKLDNE HRVDSFFWVD 240 GAARHAYIES YHDCMSFDAT YMTNMYDMPF TPFIGINRHG QSFMMGCAFL RDEKTPSYKW 300 LFEIFLVAMK GKAPNIFDKF TGMIGPILEK DEELEGDFKE CMNHTVTPGE FEIAWEAMVA 360 KYGLQNNEHF QRLYALRSSF VPAYYIHCFY PFLQSTQRSE GFNAVLKKYV NPHMSVLHFV 420 RQYQKIQDKW SRYPIEKHAS TVYTKNLLYR FSKEFEKTAK YDVKPEGQFQ FLLVPNNNYV 480 YGHGKRTYLV TALEEEGSYY CECSKFDRDG IICCHIMKIL TRLGVKAIP*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

VADVEKVWST PPIPYTGQIF SSKLEARKFY NSYAGRIGFS IRTSTSRLSG LTREQHKVIF  60
VCNKEGHGRK AKEGDPADES DDSNDEKRGF KPENSNKGHG DEDAEKRKKL VGGKKRKRER  120
MHHTDCKARM VIKLIADRWH VIFFAPNHNH ELIVKPSLKN FMSTGRIMQL MNEFYGSAQL  180
VPYEGKDVGN FRSTIRRTEK YKDMQETLDY FKELENEDPE FFYKIKLDNE HRVDSFFWVD  240
GAARHAYIES YHDCMSFDAT YMTNMYDMPF TPFIGINRHG QSFMMGCAFL RDEKTPSYKW  300
LFEIFLVAMK GKAPNIFDKF TGMIGPILEK DEELEGDFKE CMNHTVTPGE FEIAWEAMVA  360
KYGLQNNEHF QRLYALRSSF VPAYYIHCFY PFLQSTQRSE GFNAVLKKYV NPHMSVLHFV  420
RQYQKIQDKW SRYPIEKHAS TVYTKNLLYR FSKEFEKTAK YDVKPEGQFQ FLLVPNNNYV  480
YGHGKRTYLV TALEEEGSYY CECSKFDRDG IICCHIMKIL TRLGVKAIP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG062000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1W0VY60	0.0	A0A1W0VY60_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J13524.1.p	1e-165	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-59	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8NG062000.1.p