PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG054000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 477aa MW: 52391.5 Da PI: 6.643 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.7e-11 | 172 | 200 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Pavir.8NG054000.1.p 172 KTIRRLAQNREAARKSRLRKKAYIQQLES 200 6789***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.3E-6 | 168 | 243 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.956 | 170 | 214 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.2E-8 | 170 | 213 | No hit | No description |
SuperFamily | SSF57959 | 3.7E-7 | 172 | 206 | No hit | No description |
Pfam | PF00170 | 1.4E-8 | 172 | 205 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 175 | 190 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.8E-30 | 252 | 325 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MGETSSSSHS RQDPYALGYG FHGAIANSTP NFFDQEGATY FGELEEAFMH QVASLRRTQA 60 ATTSTAHHGD ATPFSTATAA TATARPPPTL DIFPAWPMRS LHTPKKGSNL TADSTEDSES 120 SSKNNSNHSS DQHGATENMV SQFDQGSQQQ EIQHKNMATS YTTKSGKTLD PKTIRRLAQN 180 REAARKSRLR KKAYIQQLES SKLKLAQMEQ DMQRPRSQGL FLGGTPGANT SSGAAMFDVE 240 YARWLDDHGR RMAELHGALQ AHLPDSDLRA IVDDALTHHD ELFQLKAMAA KSDVFHLITG 300 VWTTPAERCF LWMGGFRPSD LLKTLLPQLD PLTEQQLVGI CNLQQSSQQA EEALSQGLEQ 360 LHQSLADTMA GGSLIDDANM SFMGQMALAL GKLSNLEGFV IQADNLRQQT LHQMHRILTV 420 RQAARCFLAI GEYHNRLRAL SSLWASRPRE MLVTDEGNCG EISIAAQPSQ SQFSAF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5607 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG054000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF111321 | 0.0 | KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828229.1 | 0.0 | transcription factor TGAL4-like isoform X1 | ||||
Swissprot | Q53Q70 | 0.0 | TGAL4_ORYSJ; Transcription factor TGAL4 | ||||
TrEMBL | A0A2S3ICM0 | 0.0 | A0A2S3ICM0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01807.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4444 | 36 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-139 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG054000.1.p |
Publications ? help Back to Top | |||
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