PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG028500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1022aa    MW: 114583 Da    PI: 6.5742
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG028500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.3e-56201372118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e +krwl+++ei++iL n++ +++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+ee
  Pavir.8NG028500.1.p  20 LQEaQKRWLRPTEICEILSNYKLFSIAAEPPNRPMSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEE 109
                          56669************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrr+ywlLee++++ivlvhylevk
  Pavir.8NG028500.1.p 110 NENFQRRTYWLLEEDFTHIVLVHYLEVK 137
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.66816142IPR005559CG-1 DNA-binding domain
SMARTSM010762.3E-7819137IPR005559CG-1 DNA-binding domain
PfamPF038598.9E-5022136IPR005559CG-1 DNA-binding domain
CDDcd001020.00736442530No hitNo description
Gene3DG3DSA:2.60.40.101.7E-8442531IPR013783Immunoglobulin-like fold
PfamPF018333.3E-5443526IPR002909IPT domain
SuperFamilySSF812969.02E-17443529IPR014756Immunoglobulin E-set
SuperFamilySSF484032.02E-15621736IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-11623734No hitNo description
Gene3DG3DSA:1.25.40.201.6E-15634738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.741642736IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.805675707IPR002110Ankyrin repeat
SuperFamilySSF525401.49E-7841895IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791845874IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055846865IPR000048IQ motif, EF-hand binding site
SMARTSM000150.05867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212868892IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015870889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MAESRNFVLP GQPPDFSQML QEAQKRWLRP TEICEILSNY KLFSIAAEPP NRPMSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVESPS CSNSITSQNQ MGPQTMEAAE  180
SPISRQISDY EDTESDNFRA SSRYHPLAEM QQPVDGFITE NMFYASSSNV GSRQGYHGEM  240
LPTTANVDNH SLSHHDIARM FDHSNTGLSS VSRILFDSVP FNEPFTDCST GFTEPTLHSS  300
FACLQANNLD DSSHLQTFTS EALYTNHRSK EEADALSFTG IPSSEVNGNR YTEGSIKHPL  360
LKQSSLDLMT IEPTGLKKHD SFSRWMGKEL EEVVDLGIKS TSDAFWSNIE TVKVPDGSNV  420
LTNEQLDAYV VSPSLSQDQL FSILDVSPSY VYIGTNTKVS VTGTFLVNKE HVENRKWSCM  480
FGNVEVPALV LIDGTLRCYA PANQLGRVPF YVTCSNRVAC SEVREFEYRD PETQYIEPSR  540
SQANGVNEMH LHIRLEKLLT LGPDDHQVHV LSSGNEKYEL INAINSLMLD VKWSDQESAS  600
ANKVVSTARD QSLKKLMKEK LHHWLICKIN DDGKGPNVLC KEGQGVIHLV AALGYDWAIR  660
PIIVAGVNVN FRDAHGWTAL HWAASLGRER TIGVLITNGA AAGALTDPTS EFPSGRSPAD  720
LASVNGHKGI AGFLAESALT SHLSALTIRE SKDSTAEVCG LPAVEDLTGT NSIQIAGEDS  780
HAESLEGSLS AVRKSTQAAA RIFQAFRVES FHRKKVVEYG DDDCGLSDER TLSLVSVKPG  840
HDTHLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRKSYRK VVWSVGIVEK  900
VILRWRRKRP GLRGFQPEKQ LEGPSQIQPA KAEDEYDFLH DGRRQAEARL QRALARVHSM  960
SQYPEAREQY HRLTTCVAEM KQSRMMQDEM LNDASGGDVN DFMAGLEDLI CMDDAAMPAI  1020
W*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.134910.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG028500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793080.10.0calmodulin-binding transcription activator 2-like isoform X2
TrEMBLA0A2T7CBX90.0A0A2T7CBX9_9POAL; Uncharacterized protein
STRINGPavir.Ia03131.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein