PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG005100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 312aa    MW: 34664.9 Da    PI: 6.7247
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG005100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.22.8e-3179132255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtpeLH++F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+
  Pavir.8NG005100.1.p  79 PRLRWTPELHHCFLRAVDRLGGQHRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 132
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.26775135IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2975133IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1576133IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-2378134IPR006447Myb domain, plants
PfamPF002495.6E-980131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEGSSKDLEY YSSATTDHQL QSSEDAAAAA AAADDPHDGS TSNNSSTVEL DEAGAGDSSR  60
RKTAASPSSV RPYVRSKNPR LRWTPELHHC FLRAVDRLGG QHRATPKLVL QLMNVKGLSI  120
GHVKSHLQMY RSKKIDDSGQ VISWRDDHQS QERGQVYNLG HLSLHHGQTG ATLLSARFGA  180
WPHWNNFHQP YWLHGHHVLG SKPYYYSSAA EADPFLGTRA QSVTGASILQ GCSSYQNDRS  240
TDNQIRLLRD EENNNDPLDL ELTLDIGPRR DKRIKRSRSS WGREDEENVD RDQEVESATD  300
TGLSLSFFSS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1780134357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1780134357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1780134357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1780134357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.288381e-146callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG005100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0684401e-85BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798662.11e-167putative Myb family transcription factor At1g14600
TrEMBLA0A2T7A9X51e-165A0A2T7A9X5_9POAL; Uncharacterized protein
STRINGPavir.J01622.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-37G2-like family protein