PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG395700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 321aa    MW: 34013.5 Da    PI: 10.0659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG395700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-1885132148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Pavir.8KG395700.1.p  85 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 132
                          79******************************99************97 PP
2Myb_DNA-binding538.1e-17138182147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +Ede ++++++ lG++ W++Ia  ++ gRt++++k++w+++
  Pavir.8KG395700.1.p 138 RGNFTDDEDEVIIRLHAILGNK-WSLIAGQLP-GRTDNEIKNYWNTH 182
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2376135IPR009057Homeodomain-like
PROSITE profilePS5129417.18680132IPR017930Myb domain
SMARTSM007177.6E-1484134IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-2984179IPR009057Homeodomain-like
PfamPF002492.1E-1585132IPR001005SANT/Myb domain
CDDcd001671.63E-1187132No hitNo description
PROSITE profilePS5129427.558133187IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-27136187IPR009057Homeodomain-like
SMARTSM007171.0E-15137185IPR001005SANT/Myb domain
PfamPF002491.6E-14138182IPR001005SANT/Myb domain
CDDcd001675.80E-12140183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRGKRAAAA ATRPPRASAI YTGGCPRGAA PRQHERELPS SADRAAVPSR PVSPPRAARH  60
LSGGACYLGG AMGRSPCCEK AHTNKGAWTK EEDERLVAYI RAHGEGCWRS LPKAAGLLRC  120
GKSCRLRWMN YLRPDLKRGN FTDDEDEVII RLHAILGNKW SLIAGQLPGR TDNEIKNYWN  180
THIKRKLLAR GIDPQTHRPH GSAAAAHRAA ALLHPATAVP ALASAAKPSP AASSSDDGAR  240
SSSSTSGGAS AGEPRCPDLN LDLSVGPPPP PPADTPTSRP VCLCYRLGLR AGEACGCQAD  300
HPSGTQGLRY FRPLEQGQFI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28851877108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG395700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3725210.0EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807836.11e-134myb-related protein 308-like
SwissprotP813932e-94MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2T7EDG51e-134A0A2T7EDG5_9POAL; Uncharacterized protein
STRINGPavir.J30990.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.16e-85myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]