PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG392300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 159aa    MW: 17682.8 Da    PI: 9.7838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG392300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000835981123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cg++F +   L  H  +H
  Pavir.8KG392300.1.p 59 FECRTCGRRFATFQALGGHRTSH 81
                         89**********99998888777 PP
2zf-C2H211.50.0009199121123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cg  Fs+   L  H+r+H
  Pavir.8KG392300.1.p  99 HACGACGLGFSTGQALGGHMRRH 121
                          67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.83E-858121No hitNo description
PROSITE profilePS5015712.35986IPR007087Zinc finger, C2H2
SMARTSM003550.385981IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-95983IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
PROSITE profilePS501579.09999126IPR007087Zinc finger, C2H2
SMARTSM003551.599121IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-899123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MERCCHHLLL HVHGGEREEE EHGHRSPACL DNEAAAAAAG TASPPRSNKR RRRRGRELFE  60
CRTCGRRFAT FQALGGHRTS HLRRRPAERH RRPESAAAHA CGACGLGFST GQALGGHMRR  120
HRRPSNNCTG YDDVDLTQMI VDERPRSSSS LQLLDLFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG392300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703899.11e-38zinc finger protein ZAT11
RefseqXP_021317868.12e-38zinc finger protein ZAT5-like
TrEMBLA0A3L6Q4K82e-60A0A3L6Q4K8_PANMI; Zinc finger protein ZAT11-like
STRINGPavir.Hb00023.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-14C2H2 family protein