PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG389700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 23598.1 Da PI: 7.2192 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 8 | 30 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ Pavir.8KG389700.1.p 8 RWSKIASHLP-GRTDNEIKNYWRT 30 5*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.75 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-7 | 7 | 38 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-7 | 8 | 30 | No hit | No description |
Pfam | PF00249 | 2.2E-7 | 8 | 30 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 8 | 31 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MKIVDACRWS KIASHLPGRT DNEIKNYWRT RVQKHAKQLN CDVNSKRFKD NMRFLWMPRL 60 AERAASAAAA HHSSPASSLQ HQRQQQAAAA AGGCFGFEMA TANAAADRSP SSVVTTTATN 120 SSPCSSRTTS SGASTAATAN DDDCWAAIQQ DHDEFWSAAS NLQQQLLYFP LAADLLPMQP 180 DLSGWVQGFS EGGSSSPDTT HQQQLWSLDD IWRMH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG389700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728414 | 1e-59 | KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827780.1 | 2e-66 | transcription factor JAMYB-like | ||||
TrEMBL | A0A2S3IFS2 | 4e-65 | A0A2S3IFS2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IAC9 | 6e-66 | A0A2T8IAC9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb00036.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP57809 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-29 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG389700.1.p |