PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG299600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 659aa MW: 73311.8 Da PI: 5.1407

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG299600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	333.7	3.3e-102	282	652	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cA+av++++ + a +lL ++++++sp+gd++qRla++f+e+L+arla+s+s+ly++ +++ + ++e l+a l+ ++ + Pavir.8KG299600.1.p 282 STLLIHCAQAVATDNRRSAAELLRQIRQHSSPRGDATQRLAHVFAEGLEARLAGSGSQLYASTVAERVP---VTEYLKACWLYLAACCFE 368 579*******************************************************988888888...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 +++ aI +a++g +++Hi+D+++s+G+QWp+Ll+ La+R++gpp++RiTg++ p++g + ++e+tg+rL++ A+++gv f+f+ Pavir.8KG299600.1.p 369 MVAFKFSIAAICNAAAGRKKLHIVDYGVSYGFQWPSLLRCLANREGGPPEVRITGIDLPQPGfrPAAQIEATGRRLSNCARQFGVAFKFR 458 **********************************************************99************************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 +a ++e++ ++L+++++E+l+Vn+v ++l+de ++++s +rd vL +++++P+++++ ++ +++ Fl+rf eal yysa+ Pavir.8KG299600.1.p 459 G-IAAKWETIGADDLDIDRDEVLIVNSVR-FQNLMDEGADIDSpsPRDIVLGNIRKMRPDMFILFTTNVLSGASFFLTRFREALFYYSAM 546 .799******************997.8999999999988779**************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 fd+l+a++pr+s++r vEr l+++ + n+vaceg++r+er et+++W++r ++aG+k++pl+ +++ +++ ++r+ + + + ++ ++++ Pavir.8KG299600.1.p 547 FDMLDATAPRDSHQRLLVERGLFRPCALNAVACEGSDRVERPETYKQWQARSQRAGLKQLPLDPDIVRDVREMVREQYHKDFAIDVDHHW 636 **************************************************************************888***** PP GRAS 358 lvlgWkdrpLvsvSaW 373 l+ gWk+r L+++S W Pavir.8KG299600.1.p 637 LLEGWKGRVLYAMSTW 652 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.826	255	633	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-99	282	652	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MAEGEGLFAD PEPFSPSVFL DLPPTPHPDG TEDPVSSDDL ILPFISRMLM EEDIGDQFFY 60 QYPEHPALLQ AQQPFADILS DAATNSTSSG STATLSPSSP DDPIQLPHLL QPAPHATAGL 120 EQHDGVHSWA LLDDADEEGR RKKSSDGDQD QTVLASAFFS GNNRDILNQA FLKGKEEANR 180 FLPTNSTLGG GRKKTHNWDD YDDLEAETCR KSKLMVPEPE ETGEAVDEMI VNAYDLCLKE 240 MESLRITMGT SEDPKKKKEK KKKGMKGKGK GSRSRNEAVD LSTLLIHCAQ AVATDNRRSA 300 AELLRQIRQH SSPRGDATQR LAHVFAEGLE ARLAGSGSQL YASTVAERVP VTEYLKACWL 360 YLAACCFEMV AFKFSIAAIC NAAAGRKKLH IVDYGVSYGF QWPSLLRCLA NREGGPPEVR 420 ITGIDLPQPG FRPAAQIEAT GRRLSNCARQ FGVAFKFRGI AAKWETIGAD DLDIDRDEVL 480 IVNSVRFQNL MDEGADIDSP SPRDIVLGNI RKMRPDMFIL FTTNVLSGAS FFLTRFREAL 540 FYYSAMFDML DATAPRDSHQ RLLVERGLFR PCALNAVACE GSDRVERPET YKQWQARSQR 600 AGLKQLPLDP DIVRDVREMV REQYHKDFAI DVDHHWLLEG WKGRVLYAMS TWVADDAM*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MAEGEGLFAD PEPFSPSVFL DLPPTPHPDG TEDPVSSDDL ILPFISRMLM EEDIGDQFFY  60
QYPEHPALLQ AQQPFADILS DAATNSTSSG STATLSPSSP DDPIQLPHLL QPAPHATAGL  120
EQHDGVHSWA LLDDADEEGR RKKSSDGDQD QTVLASAFFS GNNRDILNQA FLKGKEEANR  180
FLPTNSTLGG GRKKTHNWDD YDDLEAETCR KSKLMVPEPE ETGEAVDEMI VNAYDLCLKE  240
MESLRITMGT SEDPKKKKEK KKKGMKGKGK GSRSRNEAVD LSTLLIHCAQ AVATDNRRSA  300
AELLRQIRQH SSPRGDATQR LAHVFAEGLE ARLAGSGSQL YASTVAERVP VTEYLKACWL  360
YLAACCFEMV AFKFSIAAIC NAAAGRKKLH IVDYGVSYGF QWPSLLRCLA NREGGPPEVR  420
ITGIDLPQPG FRPAAQIEAT GRRLSNCARQ FGVAFKFRGI AAKWETIGAD DLDIDRDEVL  480
IVNSVRFQNL MDEGADIDSP SPRDIVLGNI RKMRPDMFIL FTTNVLSGAS FFLTRFREAL  540
FYYSAMFDML DATAPRDSHQ RLLVERGLFR PCALNAVACE GSDRVERPET YKQWQARSQR  600
AGLKQLPLDP DIVRDVREMV REQYHKDFAI DVDHHWLLEG WKGRVLYAMS TWVADDAM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-42	287	653	24	378	Protein SCARECROW
5b3h_D	9e-42	287	653	24	378	Protein SCARECROW
5hyz_A	8e-42	285	652	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG299600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826966.1	0.0	scarecrow-like protein 30
TrEMBL	A0A3L6PL53	0.0	A0A3L6PL53_PANMI; Uncharacterized protein
STRING	Pavir.J22109.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-134	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG299600.1.p