PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG293600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 102aa MW: 11141.3 Da PI: 9.4866 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.6e-06 | 27 | 68 | 14 | 54 |
HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 d+i + +++L+ l P+ ++++++++ s a +L+ ++ YI+sL Pavir.8KG293600.1.p 27 DQISELLSRLQALRPEsQTRNGARRDSAARVLQDTCSYIRSL 68 6899************777999999***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.556 | 13 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-6 | 27 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-6 | 27 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MSSSRRSRTR RAGSSLSSSS SRSISEDQIS ELLSRLQALR PESQTRNGAR RDSAARVLQD 60 TCSYIRSLHQ EVDNLSETLA ELLSSVDVTS DQAAIIRSLL M* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths, lamina joint, stems and panicles. Expressed at low levels in roots. {ECO:0000269|PubMed:20009022}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG293600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096598 | 1e-89 | FP096598.1 Phyllostachys edulis cDNA clone: bphyst010g20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825700.1 | 1e-42 | transcription factor ILI1 | ||||
Swissprot | A2XY47 | 2e-40 | ILI1_ORYSI; Transcription factor ILI1 | ||||
Swissprot | Q7X742 | 2e-40 | ILI1_ORYSJ; Transcription factor ILI1 | ||||
TrEMBL | A0A2S3IAW3 | 3e-41 | A0A2S3IAW3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D0T1 | 3e-41 | A0A2T7D0T1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6Q125 | 3e-41 | A0A3L6Q125_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Hb01147.1.p | 3e-61 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12293 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 8e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG293600.1.p |