PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG291800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 287aa MW: 31611.3 Da PI: 7.3273

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG291800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	56	85	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +++ + erE+ Rd++N+ f eL ++l + Pavir.8KG291800.2.p 56 KKTHKAEREKLKRDQLNELFLELGSMLDLD 85 678899******************999764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.2E-6	53	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-10	53	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.563	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0069	61	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MIQLVRSREG GSRRSINLGM VADTESSNSL PGSSNAAVEM PVHGSLDQRS QEKTPKKTHK 60 AEREKLKRDQ LNELFLELGS MLDLDRQNTG KATVVGDAAR VLRDLVTQVE SLRKEQSALL 120 SERQYVSSEK TELQEENATL KSQISELANK LCVRMGNSSL GMSHRVANTR SPDLATHPMP 180 HQMWSNIPNI ISVDITRQMN TVSPLHSQHH SANDAEVYAP RPQELQLFPG ASSSPEREGS 240 HLRSAGATSP SLIDSLPSQL CLSLTQSSQD ERTSDVLVDR KERRNS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5564	0.0	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG291800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826529.1	1e-155	transcription factor BHLH062-like isoform X1
TrEMBL	A0A3L6PFR7	1e-161	A0A3L6PFR7_PANMI; Uncharacterized protein
STRING	Pavir.Ha00418.1.p	1e-172	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG291800.2.p