PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG291800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 369aa    MW: 40320.8 Da    PI: 10.3397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG291800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00039138167130
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                          +++ + erE+  Rd++N+ f eL ++l  +
  Pavir.8KG291800.1.p 138 KKTHKAEREKLKRDQLNELFLELGSMLDLD 167
                          678899******************999664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-10135201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-6135206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.563137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0069143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPRVTALPPG SPKCAGGWPP HAPCARARVR VLASLVPPLP EAPPTHQLPT PPGSRPLHLP  60
CPRPSIRPTS ISGRQPPRRP PRTIRLGIKI CRGRSRSINL GMVADTESSN SLPGSSNAAV  120
EMPVHGSLDQ RSQEKTPKKT HKAEREKLKR DQLNELFLEL GSMLDLDRQN TGKATVVGDA  180
ARVLRDLVTQ VESLRKEQSA LLSERQYVSS EKTELQEENA TLKSQISELA NKLCVRMGNS  240
SLGMSHRVAN TRSPDLATHP MPHQMWSNIP NIISVDITRQ MNTVSPLHSQ HHSANDAEVY  300
APRPQELQLF PGASSSPERE GSHLRSAGAT SPSLIDSLPS QLCLSLTQSS QDERTSDVLV  360
DRKERRNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55640.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG291800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826529.11e-152transcription factor BHLH062-like isoform X1
TrEMBLA0A3L6Q0T51e-154A0A3L6Q0T5_PANMI; Uncharacterized protein
STRINGPavir.Ha00418.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.38e-34bHLH family protein