PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG266900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 433aa    MW: 48811.9 Da    PI: 8.3498
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG266900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.18.8e-332483721128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewy..fFskrdkk.yatgkrknratksgyWkatg 87 
                          lpp frFhPtdeel+ +yL++++         +i+evdiy++ePwdLp+k+k ++ ewy   F+ ++k+ ++  +rk  + +sgyW atg
  Pavir.8KG266900.1.p 248 LPPAFRFHPTDEELILHYLCNRA---------TIPEVDIYSLEPWDLPAKAKFGDCEWYlsCFCFSKKEwHPFCHRKYSTSSSGYWMATG 328
                          79*****************9864.........4899************99999999**756455555540445788888999******** PP

                  NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k  +++ +   ++ + g k++Lvf+ gr p+g+kt Wvmheyrl
  Pavir.8KG266900.1.p 329 KASRITLSgaaDKIVLGSKRSLVFHLGRPPSGKKTGWVMHEYRL 372
                          ******9877677779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078875.9E-3898246IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019413.79E-43245405IPR003441NAC domain
PROSITE profilePS5100534.162248405IPR003441NAC domain
PfamPF023653.7E-20249372IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDQIALPVQL VWDVPNVVST KHWNLLDQLM PLHSCVQKYT NYDSPTMGLM PELYVSLAII  60
PNEVTQSRRK RGVLIELLEP DDDSDGKRPR KRKLHAKYRL RFVNKVHEAY YTMDPIKADD  120
GSHLKVALFD ENNEKITFGP MSSASVEVVA LHSDFNVDGQ DYWTSEEFSH CVVCPHHRKE  180
ASILGGDRIL VLAEGEACLS NAFFQVTSFL ARTGKFKMGI MLASVQEERI QEGISEPLLV  240
KDHRLEGLPP AFRFHPTDEE LILHYLCNRA TIPEVDIYSL EPWDLPAKAK FGDCEWYLSC  300
FCFSKKEWHP FCHRKYSTSS SGYWMATGKA SRITLSGAAD KIVLGSKRSL VFHLGRPPSG  360
KKTGWVMHEY RLPDNATLRS IVSGTTASSS TSSTTRWVLC RIFEKTRPGA AFAVHGGRRA  420
SARCRLQAFL SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-3424840520168NAC domain-containing protein 19
3swm_B3e-3424840520168NAC domain-containing protein 19
3swm_C3e-3424840520168NAC domain-containing protein 19
3swm_D3e-3424840520168NAC domain-containing protein 19
3swp_A3e-3424840520168NAC domain-containing protein 19
3swp_B3e-3424840520168NAC domain-containing protein 19
3swp_C3e-3424840520168NAC domain-containing protein 19
3swp_D3e-3424840520168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692KRPRKRK
28693KRPRKRKL
38893PRKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG266900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-121PREDICTED: uncharacterized protein LOC107304550
TrEMBLJ3ML403e-98J3ML40_ORYBR; Uncharacterized protein
STRINGPavir.Hb00869.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1537446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-40NAC domain containing protein 47