PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG251500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 292aa    MW: 31996 Da    PI: 8.383
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG251500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-11147205462
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           k+ rr+  NRe+ArrsR+R++  + +Le  v  L++eN +L k +  +++++++ + +
  Pavir.8KG251500.1.p 147 AKKMRRMLLNRESARRSRKRRETHLRNLESQVSRLTSENASLLKCMADMTEKYKNATVD 205
                          7999**************************************99888888888876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-10140208IPR004827Basic-leucine zipper domain
PfamPF001702.6E-10146200IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.496146209IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-10148201No hitNo description
SuperFamilySSF579591.29E-9148198No hitNo description
CDDcd147026.51E-13149199No hitNo description
PfamPF124986.7E-11215281IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLPPFLHSPQ LFRWEKKREP RHPHRRMVDG IDDEVVELPC GRGGAFVIGL KRRLDLYCAA  60
VAKSMEAKSQ ESSLGYSDSK SSCTSKLTSQ ASSDVGHTRD GGGATLVTNS NVIGHDDYQR  120
KPSNSGTSKE LSEGGVNLEE KSEPANAKKM RRMLLNRESA RRSRKRRETH LRNLESQVSR  180
LTSENASLLK CMADMTEKYK NATVDNRNLI IAAETMRTEV NIAEEAVRRL SGTTFLLSST  240
SELPGSMTLS SLASDVASPA IGVEDSMEHF LQGATLHDDH TACSPKCTNS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167RRSRKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG251500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805357.12e-95light-inducible protein CPRF2-like
TrEMBLA0A2T7EIZ56e-95A0A2T7EIZ5_9POAL; Uncharacterized protein
STRINGPavir.J00636.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.23e-17bZIP family protein