PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG232200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 392aa    MW: 40485.4 Da    PI: 7.0566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG232200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09224271455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.8KG232200.1.p 224 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 271
                          8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17218287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-11218275No hitNo description
PROSITE profilePS5088815.809220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17220288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-7224271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAHDGFLGGS HDLPWPLSHH AAVANAVGGG PFDALQVDVQ HALMGAGAVA GWEHDAALGS  60
IVPSRSSSLA AAAGGGAAAA PFGAPLLGAD SERAARLSCL AASGGKLSRA ASSQSLLGEP  120
ATAPAPAQQH ASDGSSSDGP SRKRKAPGGK SKAKDAVTTA TPKSREPEMR AKKCKLSMDA  180
ADDEERKPAA GDAGQSNGKG KEVGAEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM  240
KLLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPRLEL GVDSFIPKDA  300
NQPCVPAPPP PLPVYSLEGS SAALCYASSQ GATAPSVVTS AKSFVTSSTF ANHDIPDYSI  360
EGFQNANSQM GSLWEEDDLQ SLVLMGFRGS T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG232200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370229e-81BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636609e-81BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268669e-81KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.10.0transcription factor BHLH089-like
TrEMBLA0A3L6Q2U40.0A0A3L6Q2U4_PANMI; Transcription factor bHLH62-like
STRINGPavir.Ha00788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-56bHLH family protein