PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG228900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 526aa    MW: 61177.8 Da    PI: 8.4348
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG228900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.36.7e-1515107588
                 FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                          + A+++ Fs+r+++s++sk+ +e tk+ + C+k g +++ek +          +++rr+  ++rt+  a + v+k++ g+wev ++e eH
  Pavir.8KG228900.1.p  15 SCARHTSFSIRIDTSRESKKANEKTKYIYICQKVGANKKEKVAddgpitekkIVRQRRKDYVDRTHFLALMIVRKTSPGHWEVVHFEREH 104
                          669999*********************************99999****999888999999****************************** PP

                 FAR1  86 nHe 88 
                          nHe
  Pavir.8KG228900.1.p 105 NHE 107
                          **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1314107IPR004330FAR1 DNA binding domain
PfamPF105512.1E-11245292IPR018289MULE transposase domain
PROSITE profilePS509669.582402438IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-6410436IPR007527Zinc finger, SWIM-type
SMARTSM005758.5E-4413440IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSFNTSDAAK DYDNSCARHT SFSIRIDTSR ESKKANEKTK YIYICQKVGA NKKEKVADDG  60
PITEKKIVRQ RRKDYVDRTH FLALMIVRKT SPGHWEVVHF EREHNHESLR KFSLTKYLKS  120
HRDIPAEEKE FIKLLHECCI TTTCAYQIMA ELYGGIENCP YIEGDAKNLR VEYRTEYRGK  180
DVKATLEYFE ELKKEDPEFY YSYTLDEFDR VENLFWVDGA ARRSYELYSD CLSFDTTYLT  240
NAYNLFTEFK KAMGGKDPAN IITDQDIAMK AAIAEVFVSS VHRNCRWHIM ENSRKTMGAF  300
LDSKGDGFNA VLKRYVNPKN SILNFVQQYK KIQQRIFSKQ DLQEAATAMK MKKAYTRKLS  360
NAFQNELQLS SSYYVVRVEG DDLIDVVPYK RCPDLLYETR TFRVTSSKVE GLYSCTCCKF  420
ERDGVLCCHI LKVFDAFAVR EVPDRYILPR WSVEPVVDSG VEVAANEPFQ EAQIIDHRKH  480
VIHYSRMCTN FNKIVRPFMA DDEEYGIVSK QVSALQSKLV ALRKR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.307535e-71callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG228900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6T0150.0A0A3L6T015_PANMI; Uncharacterized protein
STRINGPavir.J33711.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-31FAR1-related sequence 5