PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG218700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 340aa MW: 37999.9 Da PI: 8.6117 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.7 | 3.3e-17 | 90 | 169 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF vr +s+k+ n+ t+++ vCs++g+++ +++ + r gC a++++ +++d+ w+++++++eHnH+l+ Pavir.8KG218700.1.p 90 DFYNLYSWEIGFGVRYGRSRKN-SNKYRTRQDIVCSCQGQSTAGSTR---------TCRRGCPAMIRLLRTHDHGWYISRVVKEHNHDLS 169 6******************999.67779***********99987665.........8899****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-13 | 90 | 169 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-6 | 291 | 327 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEEPGQIGMA EASRDGEPGG HEVIVNSTLE EGSCTWKISR RAISGPDARI APWEESAVSK 60 ALRAGEGRSN KPVFEPVVGT SFNSCEEAKD FYNLYSWEIG FGVRYGRSRK NSNKYRTRQD 120 IVCSCQGQST AGSTRTCRRG CPAMIRLLRT HDHGWYISRV VKEHNHDLSD SYAENKQWNS 180 HNQIDALPKD FIRKLRNNNV SIGRVCSLVG AGGNVDAVPL RKETVRNVCA KLSQENMRND 240 LGKTIELLQQ MKDADPGMSV KFRVDTDGRL QSMLWCTGKN KSDYEQFGDA ITFDTTYMTN 300 LYKMPFGLFV GVNNHFQSVI FGGVLLTTAI RIYADVPYK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG218700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822596.1 | 1e-156 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025822597.1 | 1e-156 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A1B6Q0S6 | 1e-130 | A0A1B6Q0S6_SORBI; Uncharacterized protein | ||||
STRING | Pavir.J23522.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-28 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG218700.1.p |