PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG201300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 137aa MW: 15714.1 Da PI: 8.5032 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.00038 | 15 | 45 | 8 | 41 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKa 41 ++r RRd++++ + Lr ++ + + +Kls + Pavir.8KG201300.1.p 15 NDRGRRDNLRKLVDDLRPCVVCL---QETKLSHI 45 579********************...9****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.10.10 | 1.1E-12 | 5 | 129 | IPR005135 | Endonuclease/exonuclease/phosphatase |
SuperFamily | SSF56219 | 1.13E-15 | 6 | 130 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Pfam | PF03372 | 2.4E-5 | 9 | 117 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MDFSSILIWN VRGLNDRGRR DNLRKLVDDL RPCVVCLQET KLSHISEWDV ASFLGREFSK 60 FVFLPAQQTR GGILIAWRDG TFSVIQHLVH RYSVSVLLCG STRSPWWLTG VYGPQCDEDK 120 ISFLADLREV RSSCPVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG201300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676024.1 | 1e-47 | uncharacterized protein LOC103652163 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG201300.1.p |