PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG183500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 182aa    MW: 20633.1 Da    PI: 10.2983
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG183500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-14114158347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
  Pavir.8KG183500.1.p 114 PWSEEEHRLFLRGLQKYGRGDWRNISRFAVRTRTPTQVASHAQKY 158
                          7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.41367IPR017877Myb-like domain
SMARTSM007170.251769IPR001005SANT/Myb domain
SuperFamilySSF466895.52E-101866IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-51966IPR009057Homeodomain-like
CDDcd001670.002952158No hitNo description
PROSITE profilePS5129418.042107163IPR017930Myb domain
SuperFamilySSF466891.45E-16109162IPR009057Homeodomain-like
SMARTSM007174.5E-11111161IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.8E-16111162IPR006447Myb domain, plants
PfamPF002494.9E-12114158IPR001005SANT/Myb domain
CDDcd001677.03E-11114158No hitNo description
Gene3DG3DSA:1.10.10.608.7E-13114163IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDFHHHCVRA AGPPAPAARP WSKAEDKVFE GALVVWPEHA PDRWALVAAQ LPGRTPREAW  60
EHYEALVADV DLIERGAVDV PISWDDGGGG EERAPARRAG PTRPRRENRR QGIPWSEEEH  120
RLFLRGLQKY GRGDWRNISR FAVRTRTPTQ VASHAQKYYN RQLNPASRDS KRKSIHDITT  180
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-161789779RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG183500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817656.15e-98transcription factor DIVARICATA-like
SwissprotQ8S9H72e-48DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1E5UTG32e-99A0A1E5UTG3_9POAL; Transcription factor DIVARICATA
STRINGPavir.J02275.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-45MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]