PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG176800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 350aa MW: 37357.8 Da PI: 10.5228 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.2e-44 | 168 | 267 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql Pavir.8KG176800.1.p 168 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQL 257 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +++lal+k+e Pavir.8KG176800.1.p 258 QVQLALAKAE 267 ******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.842 | 167 | 268 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-43 | 168 | 265 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MLRDPKARLV RIHSKLTVVV SGRPGPTHPF NCSQLGPPKA NIPWALAISL RSGDDDAHPS 60 KIQIPTKQSK APPSGRGDHL LRLLQAALSA GPDVPALLQT RSAARFRTAP RRHSPSPPRR 120 LLPSTMPGSS PSPTSSPGPS PSSPMSRALP VVRLAYMAGS SSSSSSSPCA SCKLLRRRCT 180 QECVFAPYFP PEDPHKFAIV HKVFGASNVS KMLQELPAQQ RADAVSSLVY EANARMRDPV 240 YGCVGAISYL QQQVSQLQVQ LALAKAEILC VHATASSSPQ SPSQQRQQQI MESEAYVSSL 300 LMQNTLMNSS SAAHHQQQML GSSLGSSGST ATAAMMLQEA CLKKESLWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-47 | 158 | 269 | 1 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-47 | 158 | 269 | 1 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG176800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100852 | 1e-112 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661028.1 | 2e-92 | LOB domain-containing protein 12 | ||||
TrEMBL | A0A368S2P5 | 4e-91 | A0A368S2P5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J13923.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-53 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG176800.1.p |