PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG174000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 362aa    MW: 38401.6 Da    PI: 9.6994
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG174000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17181214134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Pavir.8KG174000.1.p 181 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 214
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.09E-12173215No hitNo description
SMARTSM004012.1E-16175226IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268179211IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14179214IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.47E-16180229No hitNo description
PfamPF003202.7E-15181214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSAIYMSQLS TALPLMEGDH HQDHHHQGHF QAFTLPKDPP ILFPFVISSS SSSASDSSLS  60
YGSPEGHHLF RQQQHQAMLE PQHMIGGSSS ASVFATPFPT VESIRDDMIE PSSFDPYDMG  120
RLQMGGSLEA AGSWTPPAKM RITRKATADP GAAKKPRRKA QGYEDMLSMG GQPNLGVIRV  180
CSDCNTTKTP LWRSGPCGPK SLCNACGIRQ RKARRAMMAS GGGSGPVPAD GAKAATATPR  240
DAMAARAHSK VKKEKRVDVE RSLPFKKRCK VVQDQGGAAA AAAPPAAAHK AVPQPAAEVA  300
DDASQSSRDL GLLSWSRSPA RPSSAASCSF RASPALPVQQ DEITDAAMLL MTLSFGLVRS  360
W*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG174000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-70CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2S3HIY40.0A0A2S3HIY4_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-21GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]