PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG169200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 271aa    MW: 29740.2 Da    PI: 10.5699
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG169200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-172065147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ede+l+++vk++G+ +W++I++++  gR++k+c++rw++ 
  Pavir.8KG169200.1.p 20 RGHWRPGEDEKLKQLVKKYGPQNWNSISEKLE-GRSGKSCRLRWFNQ 65
                         899*****************************.***********996 PP
2Myb_DNA-binding60.63.4e-1973116247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T+eE+e+l++a++ +G++ W++Ia+ ++ gRt++ +k++w+ +
  Pavir.8KG169200.1.p  73 RPFTEEEEERLLKAHHAHGNK-WALIAHLFP-GRTDNAVKNHWHVV 116
                          69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4951566IPR017930Myb domain
SuperFamilySSF466894.87E-3018113IPR009057Homeodomain-like
SMARTSM007173.2E-141968IPR001005SANT/Myb domain
PfamPF002492.3E-162065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-262173IPR009057Homeodomain-like
CDDcd001679.18E-142364No hitNo description
PROSITE profilePS5129427.53367121IPR017930Myb domain
SMARTSM007179.6E-1771119IPR001005SANT/Myb domain
PfamPF002496.0E-1772115IPR001005SANT/Myb domain
CDDcd001672.74E-1374117No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2274119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAFSSTTNTS DGARSSSCPR GHWRPGEDEK LKQLVKKYGP QNWNSISEKL EGRSGKSCRL  60
RWFNQLDPRI NKRPFTEEEE ERLLKAHHAH GNKWALIAHL FPGRTDNAVK NHWHVVMARR  120
SRERSRLHAR AASSSHSSSP SSAYPFGTGL PATSSLCFGF SKLGGGGGLF SSPAASPPTS  180
LFKRFGTANG SKGLLGPNYE VARYSTYSGK QPAPPVSITF STPREALSMD IGHHGRHEHR  240
QKDYHASDGE EALKRKDVPF IDFLGVGVSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31201207107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG169200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656751e-128BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds.
GenBankHQ8586821e-128HQ858682.1 Zea mays clone UT1138 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827950.11e-151myb-related protein A-like
TrEMBLA0A2T7CMD61e-153A0A2T7CMD6_9POAL; Uncharacterized protein
STRINGPavir.Hb01200.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-58myb domain protein 105