PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG168000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 112aa MW: 13070.7 Da PI: 9.657

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG168000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.5	5.6e-29	11	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+ GFs+r+s+s++ k++++i++rtf+Cs+eg r ++k++ e+++ +r+etr+ C+a++k++++ dg ++++++e eHnH la Pavir.8KG168000.1.p 11 DFYNSYARVKGFSIRRSSSHNVKNTTTIKNRTFCCSREGIRGPDKRE-ESSKYSRPETRCMCQARMKISLK-DGFYYIYEFEPEHNHILA 98 6*****************************************999.999****************.*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-24	11	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MKFCAEQEAY DFYNSYARVK GFSIRRSSSH NVKNTTTIKN RTFCCSREGI RGPDKREESS 60 KYSRPETRCM CQARMKISLK DGFYYIYEFE PEHNHILATA SQAHHLRSRG Q*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG168000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020587576.1	2e-37	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_028549739.1	2e-37	protein FAR1-RELATED SEQUENCE 5 isoform X5
Refseq	XP_028549740.1	2e-37	protein FAR1-RELATED SEQUENCE 5 isoform X5
TrEMBL	A0A1W0W5Z8	7e-55	A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.Hb01264.1.p	1e-78	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8KG168000.1.p