PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG157900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 581aa MW: 60701.9 Da PI: 7.9745

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG157900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	102	125	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+dC++ F r +L+ H+r+ H Pavir.8KG157900.1.p 102 FKCSDCPMKFGREKTLQGHMRSvH 125 89*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.676	102	130	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.2E-4	102	125	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.051	102	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	125	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	305	327	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.6E-5	310	329	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MKLRDQEEEA AVGGCKKAAG VRSRGSESPQ PLHQRLPECS RRHEGGAFGS RETELPSGSL 60 ASSAGKGAAT IPQRRSPPPL SREAYGLLRD AASLGVVAAE PFKCSDCPMK FGREKTLQGH 120 MRSVHRQGSP SPSPSSSSEA PTPKKARKKQ KPKQQTVKTE PRHDDSPLPL PMSRGATSRS 180 HQVGHVVGEK PKVTVSQSPA APSNVIVIED HISDDGNDTK NITGSDGDAN PVTAITGFRA 240 VAIASSASDA AAVLPTMARA PAAAIEALWG WGPASGNGPN GPADHSPLGR EAGDRYSSTL 300 DLQRHAGMAC DMVFPTGQAL GWHRKLHYSG LMIGAASNAG SSSARRPAAA AADEQQPLEL 360 SMEAIAMNSN PATVHGSAGT MRRRSFPTSA GSAILALPAL MSPVHDPPQG MAMAGNPVAG 420 LVSAPTAATG SWSLPATTSS VHPAEIAVVP GNRGGRTIRI FGVDNFAAFP SQNQEENLPE 480 EVAMAPGNGE HLFGFNISPP FPSQNPQEET VHVNHGLEEV AVAPGNIERR SICLFGFDDS 540 PAFPSQNQEN PPHEMVPSNR GSRTIRLFGV NMAEGPKEMK *

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MKLRDQEEEA AVGGCKKAAG VRSRGSESPQ PLHQRLPECS RRHEGGAFGS RETELPSGSL  60
ASSAGKGAAT IPQRRSPPPL SREAYGLLRD AASLGVVAAE PFKCSDCPMK FGREKTLQGH  120
MRSVHRQGSP SPSPSSSSEA PTPKKARKKQ KPKQQTVKTE PRHDDSPLPL PMSRGATSRS  180
HQVGHVVGEK PKVTVSQSPA APSNVIVIED HISDDGNDTK NITGSDGDAN PVTAITGFRA  240
VAIASSASDA AAVLPTMARA PAAAIEALWG WGPASGNGPN GPADHSPLGR EAGDRYSSTL  300
DLQRHAGMAC DMVFPTGQAL GWHRKLHYSG LMIGAASNAG SSSARRPAAA AADEQQPLEL  360
SMEAIAMNSN PATVHGSAGT MRRRSFPTSA GSAILALPAL MSPVHDPPQG MAMAGNPVAG  420
LVSAPTAATG SWSLPATTSS VHPAEIAVVP GNRGGRTIRI FGVDNFAAFP SQNQEENLPE  480
EVAMAPGNGE HLFGFNISPP FPSQNPQEET VHVNHGLEEV AVAPGNIERR SICLFGFDDS  540
PAFPSQNQEN PPHEMVPSNR GSRTIRLFGV NMAEGPKEMK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG157900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T8I8P0	1e-118	A0A2T8I8P0_9POAL; Uncharacterized protein
STRING	Pavir.J13956.1.p	1e-171	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18674	7	9

Link Out ? help Back to Top
Phytozome	Pavir.8KG157900.1.p