PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG137700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 372aa MW: 38353.2 Da PI: 7.5912 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.3 | 3.3e-32 | 82 | 137 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e ++ Pavir.8KG137700.3.p 82 AVRYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEADD 137 69**************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.7E-29 | 83 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-30 | 84 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-23 | 84 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 85 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.03E-20 | 240 | 309 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-30 | 241 | 311 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 251 | 307 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDLSGTQGEL AIPMHASVVS PYGGGGSAGG HVLPQLHHEH HHGHGSNNGQ SPAAPPPPPP 60 AAAAEEMESS AKKRGAGIGG AAVRYRECLK NHAAAIGGNA TDGCGEFMPS GEEGSLEALK 120 CSACGCHRNF HRKEADDDDD DMYAVGDGFG RGHGPRAAHR LLAPALPHHS KGGGGLLVSA 180 ADPYGAFAAA RALPPAALPP SGHGHHHPHH QYVMPLSMMH TTGSESDDMD GGVAGAGGVG 240 GSGGGGSSSS KKRFRTKFTP EQKARMLEFA ERVGWRLLKL DDAMVQAFCQ EIGVKRRVLK 300 VWMHNNKHNL ATKRLEVEAS PQEQPAAAVA SPPAPAPLMP LQMMPAAMMP QAAGPSCHRG 360 GPGSPPPPKL E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 250 | 309 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG137700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678039.1 | 1e-139 | zinc-finger homeodomain protein 4 isoform X1 | ||||
Refseq | XP_008678040.1 | 1e-139 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678042.1 | 1e-139 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678044.1 | 1e-139 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678045.1 | 1e-139 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678046.1 | 1e-139 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_020408059.1 | 1e-139 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Swissprot | Q53N87 | 1e-95 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A3L6F833 | 1e-139 | A0A3L6F833_MAIZE; Zinc-finger homeodomain protein 4 | ||||
STRING | Pavir.J20298.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-27 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG137700.3.p |