PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG137700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 372aa    MW: 38353.2 Da    PI: 7.5912
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG137700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.3e-3282137359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +vrY+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e ++
  Pavir.8KG137700.2.p  82 AVRYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEADD 137
                          69**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.7E-2983135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-3084134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2384135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73585134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.03E-20240309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-30241311IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26251307IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDLSGTQGEL AIPMHASVVS PYGGGGSAGG HVLPQLHHEH HHGHGSNNGQ SPAAPPPPPP  60
AAAAEEMESS AKKRGAGIGG AAVRYRECLK NHAAAIGGNA TDGCGEFMPS GEEGSLEALK  120
CSACGCHRNF HRKEADDDDD DMYAVGDGFG RGHGPRAAHR LLAPALPHHS KGGGGLLVSA  180
ADPYGAFAAA RALPPAALPP SGHGHHHPHH QYVMPLSMMH TTGSESDDMD GGVAGAGGVG  240
GSGGGGSSSS KKRFRTKFTP EQKARMLEFA ERVGWRLLKL DDAMVQAFCQ EIGVKRRVLK  300
VWMHNNKHNL ATKRLEVEAS PQEQPAAAVA SPPAPAPLMP LQMMPAAMMP QAAGPSCHRG  360
GPGSPPPPKL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232503091675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG137700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678039.11e-139zinc-finger homeodomain protein 4 isoform X1
RefseqXP_008678040.11e-139zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678042.11e-139zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678044.11e-139zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678045.11e-139zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678046.11e-139zinc-finger homeodomain protein 4 isoform X2
RefseqXP_020408059.11e-139zinc-finger homeodomain protein 4 isoform X2
SwissprotQ53N871e-95ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A3L6F8331e-139A0A3L6F833_MAIZE; Zinc-finger homeodomain protein 4
STRINGPavir.J20298.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-27homeobox protein 31