PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG136500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 33637.6 Da PI: 6.0832 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.4e-12 | 134 | 181 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + +K +K++iL +++Y+k+L+ Pavir.8KG136500.1.p 134 QEHVAAERKRREKMQQQFVALATMVPDL-----TKTDKISILGSTIQYVKQLE 181 5799***********************9.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.691 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 134 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-17 | 135 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.99E-11 | 136 | 185 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-15 | 136 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-13 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDEANKYNSS HPEPDADDHQ DELAYMYQQE EHAGMQQLFQ DPHPHPLHHA LAMSGFQRFG 60 SASALPDLSF GGAAAVAVKT EQGQPSLSRS GILSFGALPP AARTLSFSGG EDWPDVAVEG 120 VPPERRSRSH LSAQEHVAAE RKRREKMQQQ FVALATMVPD LTKTDKISIL GSTIQYVKQL 180 EEKVKTLEKQ QSERRTTSEG FEGKGHASST DSQQAPGPSG STHGVGSSIP TVEASIHGDT 240 VLLKICCERR SGVLVMIISE LESLGLSILN TSVFPFSSSY FSINITAKIG EGFSTTVELV 300 KNLTTALRGF S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 144 | ERKRRE |
2 | 140 | 145 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG136500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828601.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2T7CLF2 | 0.0 | A0A2T7CLF2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01590.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6401 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 7e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG136500.1.p |