PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG126100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26298.1 Da PI: 4.7955 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.2e-20 | 71 | 120 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp + kr++lg+f+taeeAa+ ++aa+ +l+g Pavir.8KG126100.1.p 71 QFRGVRQRP-WGKFAAEIRDP-----NlgKRVWLGTFDTAEEAAAVYDAAAIRLRG 120 69*******.**********9.....556*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 70 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.261 | 71 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-22 | 71 | 130 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.9E-39 | 71 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-12 | 72 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 72 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-17 | 77 | 128 | No hit | No description |
PRINTS | PR00367 | 2.9E-10 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDVPGHVVRA HLADPDDATD SDSDDGRRRS VRVIDLLPPS ARAPQRKKLV HCPSDDRPGG 60 ERQGQGRGRR QFRGVRQRPW GKFAAEIRDP NLGKRVWLGT FDTAEEAAAV YDAAAIRLRG 120 RRAVTNFPFS TSSATPFSSV PSPMSSTAIA PTPTPPVRSS EAESSSASPP SIQSSSVVDA 180 DEDVVGMRWF EDEPAFESME FCLPSAPTAG QCEFGDLGDL DDLFSPELEP ASRNFPGENF 240 RL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-23 | 70 | 133 | 4 | 68 | ATERF1 |
3gcc_A | 2e-23 | 70 | 133 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15284 | 9e-34 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG126100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035923 | 8e-34 | BT035923.1 Zea mays full-length cDNA clone ZM_BFb0088F17 mRNA, complete cds. | |||
GenBank | KJ728164 | 8e-34 | KJ728164.1 Zea mays clone pUT6434 AP2-EREBP transcription factor (EREB80) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828366.1 | 6e-89 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | Q9SUE3 | 1e-25 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A2S3IC59 | 1e-87 | A0A2S3IC59_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J24236.1.p | 1e-173 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 7e-11 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG126100.1.p |
Publications ? help Back to Top | |||
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