PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG125100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 185aa MW: 20002.2 Da PI: 4.5192 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.4 | 8e-19 | 31 | 130 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l fw k ie++ +f+nh++P++ + i++ + mis+e+P +++k e+f+ elt+r+ + a++ r+++ sdi +a+++ + Pavir.8KG125100.1.p 31 LDEFWRKVvgeIENTVNFNNHTIPMSSVVEIIREHQGGLMISSETPPVVAKVLEIFVQELTVRASMCAKSHGRSSILGSDIYEAINSGES 120 6789*9876679*****************************************************************************9 PP NF-YC 89 fdflvdivpr 98 + l ++ r Pavir.8KG125100.1.p 121 YVCLNNVLRR 130 9999887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.35E-15 | 32 | 117 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.7E-14 | 46 | 115 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-6 | 53 | 114 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSSGSKGGAG RPQELHGSPP TPLPSLQQQE LDEFWRKVVG EIENTVNFNN HTIPMSSVVE 60 IIREHQGGLM ISSETPPVVA KVLEIFVQEL TVRASMCAKS HGRSSILGSD IYEAINSGES 120 YVCLNNVLRR AEPHFVATTS RLIEDGPTDH PYKSGEEATQ ISTEEPDEDL NLPTTSSGGT 180 EETK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG125100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450581.1 | 2e-45 | uncharacterized protein LOC8071541 | ||||
TrEMBL | A0A3L6Q0S2 | 1e-109 | A0A3L6Q0S2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Hb01149.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17894 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-18 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG125100.1.p |